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C5orf28 (chromosome 5 open reading frame 28)

Identity

Other alias-
HGNC (Hugo) C5orf28
LocusID (NCBI) 64417
Atlas_Id 61212
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 43444354 and ends at 43483992 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C5orf28 (5p12) / IPO11 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf28   26139
Cards
Entrez_Gene (NCBI)C5orf28  64417  chromosome 5 open reading frame 28
Aliases
GeneCards (Weizmann)C5orf28
Ensembl hg19 (Hinxton)ENSG00000151881 [Gene_View]  chr5:43444354-43483992 [Contig_View]  C5orf28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151881 [Gene_View]  chr5:43444354-43483992 [Contig_View]  C5orf28 [Vega]
ICGC DataPortalENSG00000151881
TCGA cBioPortalC5orf28
AceView (NCBI)C5orf28
Genatlas (Paris)C5orf28
WikiGenes64417
SOURCE (Princeton)C5orf28
Genetics Home Reference (NIH)C5orf28
Genomic and cartography
GoldenPath hg19 (UCSC)C5orf28  -     chr5:43444354-43483992 -  5p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C5orf28  -     5p12   [Description]    (hg38-Dec_2013)
EnsemblC5orf28 - 5p12 [CytoView hg19]  C5orf28 - 5p12 [CytoView hg38]
Mapping of homologs : NCBIC5orf28 [Mapview hg19]  C5orf28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025310 AK225220 AK315466 AL137306 BC013351
RefSeq transcript (Entrez)NM_022483
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)C5orf28
Cluster EST : UnigeneHs.732093 [ NCBI ]
CGAP (NCI)Hs.732093
Alternative Splicing GalleryENSG00000151881
Gene ExpressionC5orf28 [ NCBI-GEO ]   C5orf28 [ EBI - ARRAY_EXPRESS ]   C5orf28 [ SEEK ]   C5orf28 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64417
GTEX Portal (Tissue expression)C5orf28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VDI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VDI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VDI3
Splice isoforms : SwissVarQ0VDI3
PhosPhoSitePlusQ0VDI3
Domains : Interpro (EBI)C5orf28-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf28
DMDM Disease mutations64417
Blocks (Seattle)C5orf28
SuperfamilyQ0VDI3
Human Protein AtlasENSG00000151881
Peptide AtlasQ0VDI3
HPRD07965
IPIIPI00101047   IPI00966721   IPI00964355   
Protein Interaction databases
DIP (DOE-UCLA)Q0VDI3
IntAct (EBI)Q0VDI3
FunCoupENSG00000151881
BioGRIDC5orf28
STRING (EMBL)C5orf28
ZODIACC5orf28
Ontologies - Pathways
QuickGOQ0VDI3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC5orf28
Atlas of Cancer Signalling NetworkC5orf28
Wikipedia pathwaysC5orf28
Orthology - Evolution
OrthoDB64417
GeneTree (enSembl)ENSG00000151881
Phylogenetic Trees/Animal Genes : TreeFamC5orf28
HOVERGENQ0VDI3
HOGENOMQ0VDI3
Homologs : HomoloGeneC5orf28
Homology/Alignments : Family Browser (UCSC)C5orf28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf28
dbVarC5orf28
ClinVarC5orf28
1000_GenomesC5orf28 
Exome Variant ServerC5orf28
ExAC (Exome Aggregation Consortium)C5orf28 (select the gene name)
Genetic variants : HAPMAP64417
Genomic Variants (DGV)C5orf28 [DGVbeta]
DECIPHER (Syndromes)5:43444354-43483992  ENSG00000151881
CONAN: Copy Number AnalysisC5orf28 
Mutations
ICGC Data PortalC5orf28 
TCGA Data PortalC5orf28 
Broad Tumor PortalC5orf28
OASIS PortalC5orf28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf28
DgiDB (Drug Gene Interaction Database)C5orf28
DoCM (Curated mutations)C5orf28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf28 (select a term)
intoGenC5orf28
Cancer3DC5orf28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf28
Genetic Testing Registry C5orf28
NextProtQ0VDI3 [Medical]
TSGene64417
GENETestsC5orf28
Huge Navigator C5orf28 [HugePedia]
snp3D : Map Gene to Disease64417
BioCentury BCIQC5orf28
ClinGenC5orf28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64417
Chemical/Pharm GKB GenePA162380004
Clinical trialC5orf28
Miscellaneous
canSAR (ICR)C5orf28 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf28
EVEXC5orf28
GoPubMedC5orf28
iHOPC5orf28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:26 CET 2017

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