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C5orf34 (chromosome 5 open reading frame 34)

Identity

Alias_symbol (synonym)FLJ32363
Other alias-
HGNC (Hugo) C5orf34
LocusID (NCBI) 375444
Atlas_Id 61214
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 43486701 and ends at 43515171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCSER1 (4q22.1) / C5orf34 (5p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf34   24738
Cards
Entrez_Gene (NCBI)C5orf34  375444  chromosome 5 open reading frame 34
Aliases
GeneCards (Weizmann)C5orf34
Ensembl hg19 (Hinxton)ENSG00000172244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172244 [Gene_View]  chr5:43486701-43515171 [Contig_View]  C5orf34 [Vega]
ICGC DataPortalENSG00000172244
TCGA cBioPortalC5orf34
AceView (NCBI)C5orf34
Genatlas (Paris)C5orf34
WikiGenes375444
SOURCE (Princeton)C5orf34
Genetics Home Reference (NIH)C5orf34
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf34  -     chr5:43486701-43515171 -  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf34  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblC5orf34 - 5p12 [CytoView hg19]  C5orf34 - 5p12 [CytoView hg38]
Mapping of homologs : NCBIC5orf34 [Mapview hg19]  C5orf34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056925 AK303336 AW002049 BC036867 DB453004
RefSeq transcript (Entrez)NM_198566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf34
Cluster EST : UnigeneHs.733375 [ NCBI ]
CGAP (NCI)Hs.733375
Alternative Splicing GalleryENSG00000172244
Gene ExpressionC5orf34 [ NCBI-GEO ]   C5orf34 [ EBI - ARRAY_EXPRESS ]   C5orf34 [ SEEK ]   C5orf34 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375444
GTEX Portal (Tissue expression)C5orf34
Human Protein AtlasENSG00000172244-C5orf34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MH7
Splice isoforms : SwissVarQ96MH7
PhosPhoSitePlusQ96MH7
Domains : Interpro (EBI)DUF4520    DUF4524   
Domain families : Pfam (Sanger)DUF4520 (PF15016)    DUF4524 (PF15025)   
Domain families : Pfam (NCBI)pfam15016    pfam15025   
Conserved Domain (NCBI)C5orf34
DMDM Disease mutations375444
Blocks (Seattle)C5orf34
SuperfamilyQ96MH7
Human Protein Atlas [tissue]ENSG00000172244-C5orf34 [tissue]
Peptide AtlasQ96MH7
HPRD13407
IPIIPI00374273   IPI00968208   IPI00967931   
Protein Interaction databases
DIP (DOE-UCLA)Q96MH7
IntAct (EBI)Q96MH7
FunCoupENSG00000172244
BioGRIDC5orf34
STRING (EMBL)C5orf34
ZODIACC5orf34
Ontologies - Pathways
QuickGOQ96MH7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf34
Atlas of Cancer Signalling NetworkC5orf34
Wikipedia pathwaysC5orf34
Orthology - Evolution
OrthoDB375444
GeneTree (enSembl)ENSG00000172244
Phylogenetic Trees/Animal Genes : TreeFamC5orf34
HOVERGENQ96MH7
HOGENOMQ96MH7
Homologs : HomoloGeneC5orf34
Homology/Alignments : Family Browser (UCSC)C5orf34
Gene fusions - Rearrangements
Tumor Fusion PortalC5orf34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf34
dbVarC5orf34
ClinVarC5orf34
1000_GenomesC5orf34 
Exome Variant ServerC5orf34
ExAC (Exome Aggregation Consortium)ENSG00000172244
GNOMAD BrowserENSG00000172244
Genetic variants : HAPMAP375444
Genomic Variants (DGV)C5orf34 [DGVbeta]
DECIPHERC5orf34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf34 
Mutations
ICGC Data PortalC5orf34 
TCGA Data PortalC5orf34 
Broad Tumor PortalC5orf34
OASIS PortalC5orf34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf34
DgiDB (Drug Gene Interaction Database)C5orf34
DoCM (Curated mutations)C5orf34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf34 (select a term)
intoGenC5orf34
Cancer3DC5orf34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC5orf34
MedgenC5orf34
Genetic Testing Registry C5orf34
NextProtQ96MH7 [Medical]
TSGene375444
GENETestsC5orf34
Target ValidationC5orf34
Huge Navigator C5orf34 [HugePedia]
snp3D : Map Gene to Disease375444
BioCentury BCIQC5orf34
ClinGenC5orf34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375444
Chemical/Pharm GKB GenePA162380068
Clinical trialC5orf34
Miscellaneous
canSAR (ICR)C5orf34 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf34
EVEXC5orf34
GoPubMedC5orf34
iHOPC5orf34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:21:47 CET 2017

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