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C5orf38 (chromosome 5 open reading frame 38)

Identity

Alias_symbol (synonym)CEI
0>IRX2NB
Other alias
HGNC (Hugo) C5orf38
LocusID (NCBI) 153571
Atlas_Id 61215
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 2752131 and ends at 2755397 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PODXL (7q32.3) / C5orf38 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf38   24226
Cards
Entrez_Gene (NCBI)C5orf38  153571  chromosome 5 open reading frame 38
AliasesCEI; IRX2NB
GeneCards (Weizmann)C5orf38
Ensembl hg19 (Hinxton)ENSG00000186493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186493 [Gene_View]  chr5:2752131-2755397 [Contig_View]  C5orf38 [Vega]
ICGC DataPortalENSG00000186493
TCGA cBioPortalC5orf38
AceView (NCBI)C5orf38
Genatlas (Paris)C5orf38
WikiGenes153571
SOURCE (Princeton)C5orf38
Genetics Home Reference (NIH)C5orf38
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf38  -     chr5:2752131-2755397 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf38  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblC5orf38 - 5p15.33 [CytoView hg19]  C5orf38 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIC5orf38 [Mapview hg19]  C5orf38 [Mapview hg38]
OMIM610522   
Gene and transcription
Genbank (Entrez)AY249325 BC101608 BC101634 BC143638 BC143639
RefSeq transcript (Entrez)NM_001294337 NM_001306149 NM_001306150 NM_178569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf38
Cluster EST : UnigeneHs.668017 [ NCBI ]
CGAP (NCI)Hs.668017
Alternative Splicing GalleryENSG00000186493
Gene ExpressionC5orf38 [ NCBI-GEO ]   C5orf38 [ EBI - ARRAY_EXPRESS ]   C5orf38 [ SEEK ]   C5orf38 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153571
GTEX Portal (Tissue expression)C5orf38
Human Protein AtlasENSG00000186493-C5orf38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SI9
Splice isoforms : SwissVarQ86SI9
PhosPhoSitePlusQ86SI9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf38
DMDM Disease mutations153571
Blocks (Seattle)C5orf38
SuperfamilyQ86SI9
Human Protein Atlas [tissue]ENSG00000186493-C5orf38 [tissue]
Peptide AtlasQ86SI9
HPRD16706
IPIIPI00382725   IPI00853160   IPI00853232   IPI00967615   IPI00964297   
Protein Interaction databases
DIP (DOE-UCLA)Q86SI9
IntAct (EBI)Q86SI9
FunCoupENSG00000186493
BioGRIDC5orf38
STRING (EMBL)C5orf38
ZODIACC5orf38
Ontologies - Pathways
QuickGOQ86SI9
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC5orf38
Atlas of Cancer Signalling NetworkC5orf38
Wikipedia pathwaysC5orf38
Orthology - Evolution
OrthoDB153571
GeneTree (enSembl)ENSG00000186493
Phylogenetic Trees/Animal Genes : TreeFamC5orf38
HOVERGENQ86SI9
HOGENOMQ86SI9
Homologs : HomoloGeneC5orf38
Homology/Alignments : Family Browser (UCSC)C5orf38
Gene fusions - Rearrangements
Fusion: Tumor Portal C5orf38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf38
dbVarC5orf38
ClinVarC5orf38
1000_GenomesC5orf38 
Exome Variant ServerC5orf38
ExAC (Exome Aggregation Consortium)ENSG00000186493
GNOMAD BrowserENSG00000186493
Genetic variants : HAPMAP153571
Genomic Variants (DGV)C5orf38 [DGVbeta]
DECIPHERC5orf38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf38 
Mutations
ICGC Data PortalC5orf38 
TCGA Data PortalC5orf38 
Broad Tumor PortalC5orf38
OASIS PortalC5orf38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf38
DgiDB (Drug Gene Interaction Database)C5orf38
DoCM (Curated mutations)C5orf38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf38 (select a term)
intoGenC5orf38
Cancer3DC5orf38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610522   
Orphanet
MedgenC5orf38
Genetic Testing Registry C5orf38
NextProtQ86SI9 [Medical]
TSGene153571
GENETestsC5orf38
Target ValidationC5orf38
Huge Navigator C5orf38 [HugePedia]
snp3D : Map Gene to Disease153571
BioCentury BCIQC5orf38
ClinGenC5orf38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153571
Chemical/Pharm GKB GenePA162380158
Clinical trialC5orf38
Miscellaneous
canSAR (ICR)C5orf38 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf38
EVEXC5orf38
GoPubMedC5orf38
iHOPC5orf38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:38 CET 2017

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