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C5orf45 (chromosome 5 open reading frame 45)

Identity

Other alias-
HGNC (Hugo) C5orf45
LocusID (NCBI) 51149
Atlas_Id 61217
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179264266 and ends at 179285840 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C5orf45 (5q35.3) / IGF2 (11p15.5)C5orf45 (5q35.3) / RNF130 (5q35.3)C5orf45 (5q35.3) / RUNDC3A (17q21.31)
EIF4G2 (11p15.3) / C5orf45 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf45   30817
Cards
Entrez_Gene (NCBI)C5orf45  51149  chromosome 5 open reading frame 45
Aliases
GeneCards (Weizmann)C5orf45
Ensembl hg19 (Hinxton)ENSG00000161010 [Gene_View]  chr5:179264266-179285840 [Contig_View]  C5orf45 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161010 [Gene_View]  chr5:179264266-179285840 [Contig_View]  C5orf45 [Vega]
ICGC DataPortalENSG00000161010
TCGA cBioPortalC5orf45
AceView (NCBI)C5orf45
Genatlas (Paris)C5orf45
WikiGenes51149
SOURCE (Princeton)C5orf45
Genetics Home Reference (NIH)C5orf45
Genomic and cartography
GoldenPath hg19 (UCSC)C5orf45  -     chr5:179264266-179285840 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C5orf45  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblC5orf45 - 5q35.3 [CytoView hg19]  C5orf45 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIC5orf45 [Mapview hg19]  C5orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF153685 AK293901 AK295104 AK298954 AM392546
RefSeq transcript (Entrez)NM_001017987 NM_001018061 NM_001018062 NM_016175
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)C5orf45
Cluster EST : UnigeneHs.741169 [ NCBI ]
CGAP (NCI)Hs.741169
Alternative Splicing GalleryENSG00000161010
Gene ExpressionC5orf45 [ NCBI-GEO ]   C5orf45 [ EBI - ARRAY_EXPRESS ]   C5orf45 [ SEEK ]   C5orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51149
GTEX Portal (Tissue expression)C5orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NTE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NTE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NTE8
Splice isoforms : SwissVarQ6NTE8
PhosPhoSitePlusQ6NTE8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf45
DMDM Disease mutations51149
Blocks (Seattle)C5orf45
SuperfamilyQ6NTE8
Human Protein AtlasENSG00000161010
Peptide AtlasQ6NTE8
HPRD17420
IPIIPI00155839   IPI00888929   IPI00922395   IPI00604703   IPI00977846   IPI00973799   IPI00978734   IPI00980302   IPI00974530   IPI00973787   IPI00604588   IPI00973979   IPI00974492   IPI00974273   IPI00973963   
Protein Interaction databases
DIP (DOE-UCLA)Q6NTE8
IntAct (EBI)Q6NTE8
FunCoupENSG00000161010
BioGRIDC5orf45
STRING (EMBL)C5orf45
ZODIACC5orf45
Ontologies - Pathways
QuickGOQ6NTE8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC5orf45
Atlas of Cancer Signalling NetworkC5orf45
Wikipedia pathwaysC5orf45
Orthology - Evolution
OrthoDB51149
GeneTree (enSembl)ENSG00000161010
Phylogenetic Trees/Animal Genes : TreeFamC5orf45
HOVERGENQ6NTE8
HOGENOMQ6NTE8
Homologs : HomoloGeneC5orf45
Homology/Alignments : Family Browser (UCSC)C5orf45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf45
dbVarC5orf45
ClinVarC5orf45
1000_GenomesC5orf45 
Exome Variant ServerC5orf45
ExAC (Exome Aggregation Consortium)C5orf45 (select the gene name)
Genetic variants : HAPMAP51149
Genomic Variants (DGV)C5orf45 [DGVbeta]
DECIPHER (Syndromes)5:179264266-179285840  ENSG00000161010
CONAN: Copy Number AnalysisC5orf45 
Mutations
ICGC Data PortalC5orf45 
TCGA Data PortalC5orf45 
Broad Tumor PortalC5orf45
OASIS PortalC5orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf45
DgiDB (Drug Gene Interaction Database)C5orf45
DoCM (Curated mutations)C5orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf45 (select a term)
intoGenC5orf45
Cancer3DC5orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf45
Genetic Testing Registry C5orf45
NextProtQ6NTE8 [Medical]
TSGene51149
GENETestsC5orf45
Huge Navigator C5orf45 [HugePedia]
snp3D : Map Gene to Disease51149
BioCentury BCIQC5orf45
ClinGenC5orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51149
Chemical/Pharm GKB GenePA162380286
Clinical trialC5orf45
Miscellaneous
canSAR (ICR)C5orf45 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf45
EVEXC5orf45
GoPubMedC5orf45
iHOPC5orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:27 CET 2017

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