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C5orf47 (chromosome 5 open reading frame 47)

Identity

Alias (NCBI)-
HGNC (Hugo) C5orf47
HGNC Alias symbLOC133491
LocusID (NCBI) 133491
Atlas_Id 54177
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173989170 and ends at 174006140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE4D (5q11.2) / C5orf47 (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C5orf47   27026
Cards
Entrez_Gene (NCBI)C5orf47    chromosome 5 open reading frame 47
Aliases
GeneCards (Weizmann)C5orf47
Ensembl hg19 (Hinxton)ENSG00000185056 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185056 [Gene_View]  ENSG00000185056 [Sequence]  chr5:173989170-174006140 [Contig_View]  C5orf47 [Vega]
ICGC DataPortalENSG00000185056
TCGA cBioPortalC5orf47
AceView (NCBI)C5orf47
Genatlas (Paris)C5orf47
SOURCE (Princeton)C5orf47
Genetics Home Reference (NIH)C5orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf47  -     chr5:173989170-174006140 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf47  -     5q35.2   [Description]    (hg19-Feb_2009)
GoldenPathC5orf47 - 5q35.2 [CytoView hg19]  C5orf47 - 5q35.2 [CytoView hg38]
ImmunoBaseENSG00000185056
Genome Data Viewer NCBIC5orf47 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC034971 BC047225 BC053953 BC057842 BC066964
RefSeq transcript (Entrez)NM_001144954
Consensus coding sequences : CCDS (NCBI)C5orf47
Gene ExpressionC5orf47 [ NCBI-GEO ]   C5orf47 [ EBI - ARRAY_EXPRESS ]   C5orf47 [ SEEK ]   C5orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf47 [ Firebrowse - Broad ]
GenevisibleExpression of C5orf47 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133491
GTEX Portal (Tissue expression)C5orf47
Human Protein AtlasENSG00000185056-C5orf47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ569G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ569G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ569G3
PhosPhoSitePlusQ569G3
Domains : Interpro (EBI)DUF4680   
Domain families : Pfam (Sanger)DUF4680 (PF15730)   
Domain families : Pfam (NCBI)pfam15730   
Conserved Domain (NCBI)C5orf47
SuperfamilyQ569G3
AlphaFold pdb e-kbQ569G3   
Human Protein Atlas [tissue]ENSG00000185056-C5orf47 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q569G3
IntAct (EBI)Q569G3
BioGRIDC5orf47
STRING (EMBL)C5orf47
ZODIACC5orf47
Ontologies - Pathways
QuickGOQ569G3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf47
Atlas of Cancer Signalling NetworkC5orf47
Wikipedia pathwaysC5orf47
Orthology - Evolution
OrthoDB133491
GeneTree (enSembl)ENSG00000185056
Phylogenetic Trees/Animal Genes : TreeFamC5orf47
Homologs : HomoloGeneC5orf47
Homology/Alignments : Family Browser (UCSC)C5orf47
Gene fusions - Rearrangements
Fusion : MitelmanPDE4D/C5orf47 [5q11.2/5q35.2]  
Fusion : QuiverC5orf47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf47
dbVarC5orf47
ClinVarC5orf47
MonarchC5orf47
1000_GenomesC5orf47 
Exome Variant ServerC5orf47
GNOMAD BrowserENSG00000185056
Varsome BrowserC5orf47
ACMGC5orf47 variants
VarityQ569G3
Genomic Variants (DGV)C5orf47 [DGVbeta]
DECIPHERC5orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf47 
Mutations
ICGC Data PortalC5orf47 
TCGA Data PortalC5orf47 
Broad Tumor PortalC5orf47
OASIS PortalC5orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC5orf47
Mutations and Diseases : HGMDC5orf47
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC5orf47
DgiDB (Drug Gene Interaction Database)C5orf47
DoCM (Curated mutations)C5orf47
CIViC (Clinical Interpretations of Variants in Cancer)C5orf47
Cancer3DC5orf47
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC5orf47
MedgenC5orf47
Genetic Testing Registry C5orf47
NextProtQ569G3 [Medical]
GENETestsC5orf47
Target ValidationC5orf47
Huge Navigator C5orf47 [HugePedia]
ClinGenC5orf47
Clinical trials, drugs, therapy
MyCancerGenomeC5orf47
Protein Interactions : CTDC5orf47
Pharm GKB GenePA162380318
PharosQ569G3
Clinical trialC5orf47
Miscellaneous
canSAR (ICR)C5orf47
HarmonizomeC5orf47
DataMed IndexC5orf47
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC5orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:51 CEST 2021

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