Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C5orf47 (chromosome 5 open reading frame 47)

Identity

Alias_symbol (synonym)LOC133491
Other alias-
HGNC (Hugo) C5orf47
LocusID (NCBI) 133491
Atlas_Id 54177
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173989159 and ends at 174006140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDE4D (5q11.2) / C5orf47 (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf47   27026
Cards
Entrez_Gene (NCBI)C5orf47  133491  chromosome 5 open reading frame 47
Aliases
GeneCards (Weizmann)C5orf47
Ensembl hg19 (Hinxton)ENSG00000185056 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185056 [Gene_View]  chr5:173989159-174006140 [Contig_View]  C5orf47 [Vega]
ICGC DataPortalENSG00000185056
TCGA cBioPortalC5orf47
AceView (NCBI)C5orf47
Genatlas (Paris)C5orf47
WikiGenes133491
SOURCE (Princeton)C5orf47
Genetics Home Reference (NIH)C5orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf47  -     chr5:173989159-174006140 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf47  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblC5orf47 - 5q35.2 [CytoView hg19]  C5orf47 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIC5orf47 [Mapview hg19]  C5orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034971 BC047225 BC053953 BC057842 BC066964
RefSeq transcript (Entrez)NM_001144954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf47
Cluster EST : UnigeneHs.131469 [ NCBI ]
CGAP (NCI)Hs.131469
Alternative Splicing GalleryENSG00000185056
Gene ExpressionC5orf47 [ NCBI-GEO ]   C5orf47 [ EBI - ARRAY_EXPRESS ]   C5orf47 [ SEEK ]   C5orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133491
GTEX Portal (Tissue expression)C5orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ569G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ569G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ569G3
Splice isoforms : SwissVarQ569G3
PhosPhoSitePlusQ569G3
Domains : Interpro (EBI)DUF4680   
Domain families : Pfam (Sanger)DUF4680 (PF15730)   
Domain families : Pfam (NCBI)pfam15730   
Conserved Domain (NCBI)C5orf47
DMDM Disease mutations133491
Blocks (Seattle)C5orf47
SuperfamilyQ569G3
Human Protein AtlasENSG00000185056
Peptide AtlasQ569G3
IPIIPI00920972   
Protein Interaction databases
DIP (DOE-UCLA)Q569G3
IntAct (EBI)Q569G3
FunCoupENSG00000185056
BioGRIDC5orf47
STRING (EMBL)C5orf47
ZODIACC5orf47
Ontologies - Pathways
QuickGOQ569G3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf47
Atlas of Cancer Signalling NetworkC5orf47
Wikipedia pathwaysC5orf47
Orthology - Evolution
OrthoDB133491
GeneTree (enSembl)ENSG00000185056
Phylogenetic Trees/Animal Genes : TreeFamC5orf47
HOVERGENQ569G3
HOGENOMQ569G3
Homologs : HomoloGeneC5orf47
Homology/Alignments : Family Browser (UCSC)C5orf47
Gene fusions - Rearrangements
Fusion : MitelmanPDE4D/C5orf47 [5q11.2/5q35.2]  [t(5;5)(q12;q35)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf47
dbVarC5orf47
ClinVarC5orf47
1000_GenomesC5orf47 
Exome Variant ServerC5orf47
ExAC (Exome Aggregation Consortium)C5orf47 (select the gene name)
Genetic variants : HAPMAP133491
Genomic Variants (DGV)C5orf47 [DGVbeta]
DECIPHERC5orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf47 
Mutations
ICGC Data PortalC5orf47 
TCGA Data PortalC5orf47 
Broad Tumor PortalC5orf47
OASIS PortalC5orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf47
DgiDB (Drug Gene Interaction Database)C5orf47
DoCM (Curated mutations)C5orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf47 (select a term)
intoGenC5orf47
Cancer3DC5orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf47
Genetic Testing Registry C5orf47
NextProtQ569G3 [Medical]
TSGene133491
GENETestsC5orf47
Target ValidationC5orf47
Huge Navigator C5orf47 [HugePedia]
snp3D : Map Gene to Disease133491
BioCentury BCIQC5orf47
ClinGenC5orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133491
Chemical/Pharm GKB GenePA162380318
Clinical trialC5orf47
Miscellaneous
canSAR (ICR)C5orf47 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf47
EVEXC5orf47
GoPubMedC5orf47
iHOPC5orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:26:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.