Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C5orf49 (chromosome 5 open reading frame 49)

Identity

Alias_symbol (synonym)LOC134121
Other alias-
HGNC (Hugo) C5orf49
LocusID (NCBI) 134121
Atlas_Id 61219
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 7830379 and ends at 7851490 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf49   27028
Cards
Entrez_Gene (NCBI)C5orf49  134121  chromosome 5 open reading frame 49
Aliases
GeneCards (Weizmann)C5orf49
Ensembl hg19 (Hinxton)ENSG00000215217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215217 [Gene_View]  chr5:7830379-7851490 [Contig_View]  C5orf49 [Vega]
ICGC DataPortalENSG00000215217
TCGA cBioPortalC5orf49
AceView (NCBI)C5orf49
Genatlas (Paris)C5orf49
WikiGenes134121
SOURCE (Princeton)C5orf49
Genetics Home Reference (NIH)C5orf49
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf49  -     chr5:7830379-7851490 -  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf49  -     5p15.31   [Description]    (hg19-Feb_2009)
EnsemblC5orf49 - 5p15.31 [CytoView hg19]  C5orf49 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBIC5orf49 [Mapview hg19]  C5orf49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC053548 BC062569 BC104204 BC104205 BC115361
RefSeq transcript (Entrez)NM_001089584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf49
Cluster EST : UnigeneHs.709979 [ NCBI ]
CGAP (NCI)Hs.709979
Alternative Splicing GalleryENSG00000215217
Gene ExpressionC5orf49 [ NCBI-GEO ]   C5orf49 [ EBI - ARRAY_EXPRESS ]   C5orf49 [ SEEK ]   C5orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134121
GTEX Portal (Tissue expression)C5orf49
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4QMS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4QMS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4QMS7
Splice isoforms : SwissVarA4QMS7
PhosPhoSitePlusA4QMS7
Domains : Interpro (EBI)DUF4541   
Domain families : Pfam (Sanger)DUF4541 (PF15074)   
Domain families : Pfam (NCBI)pfam15074   
Conserved Domain (NCBI)C5orf49
DMDM Disease mutations134121
Blocks (Seattle)C5orf49
SuperfamilyA4QMS7
Human Protein AtlasENSG00000215217
Peptide AtlasA4QMS7
IPIIPI00782948   IPI00968152   
Protein Interaction databases
DIP (DOE-UCLA)A4QMS7
IntAct (EBI)A4QMS7
FunCoupENSG00000215217
BioGRIDC5orf49
STRING (EMBL)C5orf49
ZODIACC5orf49
Ontologies - Pathways
QuickGOA4QMS7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf49
Atlas of Cancer Signalling NetworkC5orf49
Wikipedia pathwaysC5orf49
Orthology - Evolution
OrthoDB134121
GeneTree (enSembl)ENSG00000215217
Phylogenetic Trees/Animal Genes : TreeFamC5orf49
HOVERGENA4QMS7
HOGENOMA4QMS7
Homologs : HomoloGeneC5orf49
Homology/Alignments : Family Browser (UCSC)C5orf49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf49
dbVarC5orf49
ClinVarC5orf49
1000_GenomesC5orf49 
Exome Variant ServerC5orf49
ExAC (Exome Aggregation Consortium)C5orf49 (select the gene name)
Genetic variants : HAPMAP134121
Genomic Variants (DGV)C5orf49 [DGVbeta]
DECIPHERC5orf49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf49 
Mutations
ICGC Data PortalC5orf49 
TCGA Data PortalC5orf49 
Broad Tumor PortalC5orf49
OASIS PortalC5orf49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf49
DgiDB (Drug Gene Interaction Database)C5orf49
DoCM (Curated mutations)C5orf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf49 (select a term)
intoGenC5orf49
Cancer3DC5orf49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf49
Genetic Testing Registry C5orf49
NextProtA4QMS7 [Medical]
TSGene134121
GENETestsC5orf49
Target ValidationC5orf49
Huge Navigator C5orf49 [HugePedia]
snp3D : Map Gene to Disease134121
BioCentury BCIQC5orf49
ClinGenC5orf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134121
Chemical/Pharm GKB GenePA162380347
Clinical trialC5orf49
Miscellaneous
canSAR (ICR)C5orf49 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf49
EVEXC5orf49
GoPubMedC5orf49
iHOPC5orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:22 CEST 2017

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