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C5orf51 (chromosome 5 open reading frame 51)

Identity

Alias_symbol (synonym)LOC285636
Other alias-
HGNC (Hugo) C5orf51
LocusID (NCBI) 285636
Atlas_Id 61220
Location 5p13.1  [Link to chromosome band 5p13]
Location_base_pair Starts at 41904344 and ends at 41921636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5orf51 (5p13.1) / C5orf51 (5p13.1)FOXP1 (3p13) / C5orf51 (5p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf51   27750
Cards
Entrez_Gene (NCBI)C5orf51  285636  chromosome 5 open reading frame 51
Aliases
GeneCards (Weizmann)C5orf51
Ensembl hg19 (Hinxton)ENSG00000205765 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205765 [Gene_View]  chr5:41904344-41921636 [Contig_View]  C5orf51 [Vega]
ICGC DataPortalENSG00000205765
TCGA cBioPortalC5orf51
AceView (NCBI)C5orf51
Genatlas (Paris)C5orf51
WikiGenes285636
SOURCE (Princeton)C5orf51
Genetics Home Reference (NIH)C5orf51
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf51  -     chr5:41904344-41921636 +  5p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf51  -     5p13.1   [Description]    (hg19-Feb_2009)
EnsemblC5orf51 - 5p13.1 [CytoView hg19]  C5orf51 - 5p13.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf51 [Mapview hg19]  C5orf51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094002 AL833916 BC131721 BF439305 BQ272495
RefSeq transcript (Entrez)NM_175921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf51
Cluster EST : UnigeneHs.29899 [ NCBI ]
CGAP (NCI)Hs.29899
Alternative Splicing GalleryENSG00000205765
Gene ExpressionC5orf51 [ NCBI-GEO ]   C5orf51 [ EBI - ARRAY_EXPRESS ]   C5orf51 [ SEEK ]   C5orf51 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285636
GTEX Portal (Tissue expression)C5orf51
Human Protein AtlasENSG00000205765-C5orf51 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDU8
Splice isoforms : SwissVarA6NDU8
PhosPhoSitePlusA6NDU8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf51
DMDM Disease mutations285636
Blocks (Seattle)C5orf51
SuperfamilyA6NDU8
Human Protein Atlas [tissue]ENSG00000205765-C5orf51 [tissue]
Peptide AtlasA6NDU8
HPRD11258
IPIIPI00374272   IPI00465108   
Protein Interaction databases
DIP (DOE-UCLA)A6NDU8
IntAct (EBI)A6NDU8
FunCoupENSG00000205765
BioGRIDC5orf51
STRING (EMBL)C5orf51
ZODIACC5orf51
Ontologies - Pathways
QuickGOA6NDU8
Ontology : AmiGOnucleoplasm  cytosol  
Ontology : EGO-EBInucleoplasm  cytosol  
NDEx NetworkC5orf51
Atlas of Cancer Signalling NetworkC5orf51
Wikipedia pathwaysC5orf51
Orthology - Evolution
OrthoDB285636
GeneTree (enSembl)ENSG00000205765
Phylogenetic Trees/Animal Genes : TreeFamC5orf51
HOVERGENA6NDU8
HOGENOMA6NDU8
Homologs : HomoloGeneC5orf51
Homology/Alignments : Family Browser (UCSC)C5orf51
Gene fusions - Rearrangements
Tumor Fusion PortalC5orf51
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf51
dbVarC5orf51
ClinVarC5orf51
1000_GenomesC5orf51 
Exome Variant ServerC5orf51
ExAC (Exome Aggregation Consortium)ENSG00000205765
GNOMAD BrowserENSG00000205765
Genetic variants : HAPMAP285636
Genomic Variants (DGV)C5orf51 [DGVbeta]
DECIPHERC5orf51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf51 
Mutations
ICGC Data PortalC5orf51 
TCGA Data PortalC5orf51 
Broad Tumor PortalC5orf51
OASIS PortalC5orf51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf51
DgiDB (Drug Gene Interaction Database)C5orf51
DoCM (Curated mutations)C5orf51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf51 (select a term)
intoGenC5orf51
Cancer3DC5orf51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC5orf51
MedgenC5orf51
Genetic Testing Registry C5orf51
NextProtA6NDU8 [Medical]
TSGene285636
GENETestsC5orf51
Target ValidationC5orf51
Huge Navigator C5orf51 [HugePedia]
snp3D : Map Gene to Disease285636
BioCentury BCIQC5orf51
ClinGenC5orf51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285636
Chemical/Pharm GKB GenePA162380371
Clinical trialC5orf51
Miscellaneous
canSAR (ICR)C5orf51 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf51
EVEXC5orf51
GoPubMedC5orf51
iHOPC5orf51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:28 CET 2017

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