Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C5orf52 (chromosome 5 open reading frame 52)

Identity

Other alias-
HGNC (Hugo) C5orf52
LocusID (NCBI) 100190949
Atlas_Id 61221
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 157671553 and ends at 157680154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf52   35121
Cards
Entrez_Gene (NCBI)C5orf52  100190949  chromosome 5 open reading frame 52
Aliases
GeneCards (Weizmann)C5orf52
Ensembl hg19 (Hinxton)ENSG00000187658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187658 [Gene_View]  chr5:157671553-157680154 [Contig_View]  C5orf52 [Vega]
ICGC DataPortalENSG00000187658
TCGA cBioPortalC5orf52
AceView (NCBI)C5orf52
Genatlas (Paris)C5orf52
WikiGenes100190949
SOURCE (Princeton)C5orf52
Genetics Home Reference (NIH)C5orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf52  -     chr5:157671553-157680154 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf52  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblC5orf52 - 5q33.3 [CytoView hg19]  C5orf52 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIC5orf52 [Mapview hg19]  C5orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI187821 BG721329
RefSeq transcript (Entrez)NM_001145132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf52
Cluster EST : UnigeneHs.720862 [ NCBI ]
CGAP (NCI)Hs.720862
Alternative Splicing GalleryENSG00000187658
Gene ExpressionC5orf52 [ NCBI-GEO ]   C5orf52 [ EBI - ARRAY_EXPRESS ]   C5orf52 [ SEEK ]   C5orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100190949
GTEX Portal (Tissue expression)C5orf52
Human Protein AtlasENSG00000187658-C5orf52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGY3
Splice isoforms : SwissVarA6NGY3
PhosPhoSitePlusA6NGY3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf52
DMDM Disease mutations100190949
Blocks (Seattle)C5orf52
SuperfamilyA6NGY3
Human Protein Atlas [tissue]ENSG00000187658-C5orf52 [tissue]
Peptide AtlasA6NGY3
IPIIPI00398055   
Protein Interaction databases
DIP (DOE-UCLA)A6NGY3
IntAct (EBI)A6NGY3
FunCoupENSG00000187658
BioGRIDC5orf52
STRING (EMBL)C5orf52
ZODIACC5orf52
Ontologies - Pathways
QuickGOA6NGY3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf52
Atlas of Cancer Signalling NetworkC5orf52
Wikipedia pathwaysC5orf52
Orthology - Evolution
OrthoDB100190949
GeneTree (enSembl)ENSG00000187658
Phylogenetic Trees/Animal Genes : TreeFamC5orf52
HOVERGENA6NGY3
HOGENOMA6NGY3
Homologs : HomoloGeneC5orf52
Homology/Alignments : Family Browser (UCSC)C5orf52
Gene fusions - Rearrangements
Fusion: Tumor Portal C5orf52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf52
dbVarC5orf52
ClinVarC5orf52
1000_GenomesC5orf52 
Exome Variant ServerC5orf52
ExAC (Exome Aggregation Consortium)ENSG00000187658
GNOMAD BrowserENSG00000187658
Genetic variants : HAPMAP100190949
Genomic Variants (DGV)C5orf52 [DGVbeta]
DECIPHERC5orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf52 
Mutations
ICGC Data PortalC5orf52 
TCGA Data PortalC5orf52 
Broad Tumor PortalC5orf52
OASIS PortalC5orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf52
DgiDB (Drug Gene Interaction Database)C5orf52
DoCM (Curated mutations)C5orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf52 (select a term)
intoGenC5orf52
Cancer3DC5orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf52
Genetic Testing Registry C5orf52
NextProtA6NGY3 [Medical]
TSGene100190949
GENETestsC5orf52
Target ValidationC5orf52
Huge Navigator C5orf52 [HugePedia]
snp3D : Map Gene to Disease100190949
BioCentury BCIQC5orf52
ClinGenC5orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100190949
Chemical/Pharm GKB GenePA164717340
Clinical trialC5orf52
Miscellaneous
canSAR (ICR)C5orf52 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf52
EVEXC5orf52
GoPubMedC5orf52
iHOPC5orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:39 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.