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C5orf56 (chromosome 5 open reading frame 56)

Identity

Other alias-
HGNC (Hugo) C5orf56
LocusID (NCBI) 441108
Atlas_Id 78125
Location 5q31.1  [Link to chromosome band 5q31]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf56   33838
Cards
Entrez_Gene (NCBI)C5orf56  441108  chromosome 5 open reading frame 56
Aliases
GeneCards (Weizmann)C5orf56
Ensembl hg19 (Hinxton)ENSG00000197536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197536 [Gene_View]  - [Contig_View]  C5orf56 [Vega]
ICGC DataPortalENSG00000197536
TCGA cBioPortalC5orf56
AceView (NCBI)C5orf56
Genatlas (Paris)C5orf56
WikiGenes441108
SOURCE (Princeton)C5orf56
Genetics Home Reference (NIH)C5orf56
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf56  -  
GoldenPath hg19 (UCSC)C5orf56  -  
EnsemblC5orf56 - [CytoView hg19]  C5orf56 - [CytoView hg38]
Mapping of homologs : NCBIC5orf56 [Mapview hg19]  C5orf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI377899 AK025221 AK096941 AK128882 AK129632
RefSeq transcript (Entrez)NM_001013717 NM_001207001 NM_001207002 NM_001207003
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf56
Cluster EST : UnigeneHs.658288 [ NCBI ]
CGAP (NCI)Hs.658288
Alternative Splicing GalleryENSG00000197536
Gene ExpressionC5orf56 [ NCBI-GEO ]   C5orf56 [ EBI - ARRAY_EXPRESS ]   C5orf56 [ SEEK ]   C5orf56 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441108
GTEX Portal (Tissue expression)C5orf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8D9
Splice isoforms : SwissVarQ8N8D9
PhosPhoSitePlusQ8N8D9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf56
DMDM Disease mutations441108
Blocks (Seattle)C5orf56
SuperfamilyQ8N8D9
Human Protein AtlasENSG00000197536
Peptide AtlasQ8N8D9
HPRD18460
IPIIPI00167452   IPI00658043   IPI00983160   IPI00658009   IPI00878055   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8D9
IntAct (EBI)Q8N8D9
FunCoupENSG00000197536
BioGRIDC5orf56
STRING (EMBL)C5orf56
ZODIACC5orf56
Ontologies - Pathways
QuickGOQ8N8D9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf56
Atlas of Cancer Signalling NetworkC5orf56
Wikipedia pathwaysC5orf56
Orthology - Evolution
OrthoDB441108
GeneTree (enSembl)ENSG00000197536
Phylogenetic Trees/Animal Genes : TreeFamC5orf56
HOVERGENQ8N8D9
HOGENOMQ8N8D9
Homologs : HomoloGeneC5orf56
Homology/Alignments : Family Browser (UCSC)C5orf56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf56
dbVarC5orf56
ClinVarC5orf56
1000_GenomesC5orf56 
Exome Variant ServerC5orf56
ExAC (Exome Aggregation Consortium)C5orf56 (select the gene name)
Genetic variants : HAPMAP441108
Genomic Variants (DGV)C5orf56 [DGVbeta]
DECIPHERC5orf56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf56 
Mutations
ICGC Data PortalC5orf56 
TCGA Data PortalC5orf56 
Broad Tumor PortalC5orf56
OASIS PortalC5orf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf56
DgiDB (Drug Gene Interaction Database)C5orf56
DoCM (Curated mutations)C5orf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf56 (select a term)
intoGenC5orf56
Cancer3DC5orf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf56
Genetic Testing Registry C5orf56
NextProtQ8N8D9 [Medical]
TSGene441108
GENETestsC5orf56
Target ValidationC5orf56
Huge Navigator C5orf56 [HugePedia]
snp3D : Map Gene to Disease441108
BioCentury BCIQC5orf56
ClinGenC5orf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441108
Chemical/Pharm GKB GenePA165660191
Clinical trialC5orf56
Miscellaneous
canSAR (ICR)C5orf56 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf56
EVEXC5orf56
GoPubMedC5orf56
iHOPC5orf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:25 CEST 2017

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