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C5orf58 (chromosome 5 open reading frame 58)

Identity

Other alias-
HGNC (Hugo) C5orf58
LocusID (NCBI) 133874
Atlas_Id 61223
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 170232917 and ends at 170246231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
S100A8 (1q21.3) / C5orf58 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf58   37272
Cards
Entrez_Gene (NCBI)C5orf58  133874  chromosome 5 open reading frame 58
Aliases
GeneCards (Weizmann)C5orf58
Ensembl hg19 (Hinxton)ENSG00000234511 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234511 [Gene_View]  chr5:170232917-170246231 [Contig_View]  C5orf58 [Vega]
ICGC DataPortalENSG00000234511
TCGA cBioPortalC5orf58
AceView (NCBI)C5orf58
Genatlas (Paris)C5orf58
WikiGenes133874
SOURCE (Princeton)C5orf58
Genetics Home Reference (NIH)C5orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf58  -     chr5:170232917-170246231 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf58  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblC5orf58 - 5q35.1 [CytoView hg19]  C5orf58 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf58 [Mapview hg19]  C5orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA758527 BC030767 BC092511 BU561519 BU561730
RefSeq transcript (Entrez)NM_001102609 NM_001305393 NM_001305394 NM_001305395 NM_001305396 NM_001305397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf58
Cluster EST : UnigeneHs.519749 [ NCBI ]
CGAP (NCI)Hs.519749
Alternative Splicing GalleryENSG00000234511
Gene ExpressionC5orf58 [ NCBI-GEO ]   C5orf58 [ EBI - ARRAY_EXPRESS ]   C5orf58 [ SEEK ]   C5orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133874
GTEX Portal (Tissue expression)C5orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J3I9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J3I9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J3I9
Splice isoforms : SwissVarC9J3I9
PhosPhoSitePlusC9J3I9
Domaine pattern : Prosite (Expaxy)TUBULIN_B_AUTOREG (PS00228)   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf58
DMDM Disease mutations133874
Blocks (Seattle)C5orf58
SuperfamilyC9J3I9
Human Protein AtlasENSG00000234511
Peptide AtlasC9J3I9
IPIIPI00047532   IPI00975507   
Protein Interaction databases
DIP (DOE-UCLA)C9J3I9
IntAct (EBI)C9J3I9
FunCoupENSG00000234511
BioGRIDC5orf58
STRING (EMBL)C5orf58
ZODIACC5orf58
Ontologies - Pathways
QuickGOC9J3I9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf58
Atlas of Cancer Signalling NetworkC5orf58
Wikipedia pathwaysC5orf58
Orthology - Evolution
OrthoDB133874
GeneTree (enSembl)ENSG00000234511
Phylogenetic Trees/Animal Genes : TreeFamC5orf58
HOVERGENC9J3I9
HOGENOMC9J3I9
Homologs : HomoloGeneC5orf58
Homology/Alignments : Family Browser (UCSC)C5orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf58
dbVarC5orf58
ClinVarC5orf58
1000_GenomesC5orf58 
Exome Variant ServerC5orf58
ExAC (Exome Aggregation Consortium)C5orf58 (select the gene name)
Genetic variants : HAPMAP133874
Genomic Variants (DGV)C5orf58 [DGVbeta]
DECIPHERC5orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf58 
Mutations
ICGC Data PortalC5orf58 
TCGA Data PortalC5orf58 
Broad Tumor PortalC5orf58
OASIS PortalC5orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf58
DgiDB (Drug Gene Interaction Database)C5orf58
DoCM (Curated mutations)C5orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf58 (select a term)
intoGenC5orf58
Cancer3DC5orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf58
Genetic Testing Registry C5orf58
NextProtC9J3I9 [Medical]
TSGene133874
GENETestsC5orf58
Target ValidationC5orf58
Huge Navigator C5orf58 [HugePedia]
snp3D : Map Gene to Disease133874
BioCentury BCIQC5orf58
ClinGenC5orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133874
Chemical/Pharm GKB GenePA165660204
Clinical trialC5orf58
Miscellaneous
canSAR (ICR)C5orf58 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf58
EVEXC5orf58
GoPubMedC5orf58
iHOPC5orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:25 CEST 2017

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