Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C5orf60 (chromosome 5 open reading frame 60)

Identity

Other alias-
HGNC (Hugo) C5orf60
LocusID (NCBI) 285679
Atlas_Id 61224
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179641544 and ends at 179645046 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf60   27753
Cards
Entrez_Gene (NCBI)C5orf60  285679  chromosome 5 open reading frame 60
Aliases
GeneCards (Weizmann)C5orf60
Ensembl hg19 (Hinxton)ENSG00000204661 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204661 [Gene_View]  chr5:179641544-179645046 [Contig_View]  C5orf60 [Vega]
ICGC DataPortalENSG00000204661
TCGA cBioPortalC5orf60
AceView (NCBI)C5orf60
Genatlas (Paris)C5orf60
WikiGenes285679
SOURCE (Princeton)C5orf60
Genetics Home Reference (NIH)C5orf60
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf60  -     chr5:179641544-179645046 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf60  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblC5orf60 - 5q35.3 [CytoView hg19]  C5orf60 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIC5orf60 [Mapview hg19]  C5orf60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI024381 AK093042 BC040992 BC043435 BC130442
RefSeq transcript (Entrez)NM_001013718 NM_001142306 NM_001305388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf60
Cluster EST : UnigeneHs.558748 [ NCBI ]
CGAP (NCI)Hs.558748
Alternative Splicing GalleryENSG00000204661
Gene ExpressionC5orf60 [ NCBI-GEO ]   C5orf60 [ EBI - ARRAY_EXPRESS ]   C5orf60 [ SEEK ]   C5orf60 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285679
GTEX Portal (Tissue expression)C5orf60
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFR6
Splice isoforms : SwissVarA6NFR6
PhosPhoSitePlusA6NFR6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf60
DMDM Disease mutations285679
Blocks (Seattle)C5orf60
SuperfamilyA6NFR6
Human Protein AtlasENSG00000204661
Peptide AtlasA6NFR6
IPIIPI00741968   IPI00896432   IPI00955784   IPI01017979   IPI00167939   IPI00965042   
Protein Interaction databases
DIP (DOE-UCLA)A6NFR6
IntAct (EBI)A6NFR6
FunCoupENSG00000204661
BioGRIDC5orf60
STRING (EMBL)C5orf60
ZODIACC5orf60
Ontologies - Pathways
QuickGOA6NFR6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC5orf60
Atlas of Cancer Signalling NetworkC5orf60
Wikipedia pathwaysC5orf60
Orthology - Evolution
OrthoDB285679
GeneTree (enSembl)ENSG00000204661
Phylogenetic Trees/Animal Genes : TreeFamC5orf60
HOVERGENA6NFR6
HOGENOMA6NFR6
Homologs : HomoloGeneC5orf60
Homology/Alignments : Family Browser (UCSC)C5orf60
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf60
dbVarC5orf60
ClinVarC5orf60
1000_GenomesC5orf60 
Exome Variant ServerC5orf60
ExAC (Exome Aggregation Consortium)C5orf60 (select the gene name)
Genetic variants : HAPMAP285679
Genomic Variants (DGV)C5orf60 [DGVbeta]
DECIPHERC5orf60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf60 
Mutations
ICGC Data PortalC5orf60 
TCGA Data PortalC5orf60 
Broad Tumor PortalC5orf60
OASIS PortalC5orf60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf60
DgiDB (Drug Gene Interaction Database)C5orf60
DoCM (Curated mutations)C5orf60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf60 (select a term)
intoGenC5orf60
Cancer3DC5orf60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf60
Genetic Testing Registry C5orf60
NextProtA6NFR6 [Medical]
TSGene285679
GENETestsC5orf60
Target ValidationC5orf60
Huge Navigator C5orf60 [HugePedia]
snp3D : Map Gene to Disease285679
BioCentury BCIQC5orf60
ClinGenC5orf60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285679
Chemical/Pharm GKB GenePA165660205
Clinical trialC5orf60
Miscellaneous
canSAR (ICR)C5orf60 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf60
EVEXC5orf60
GoPubMedC5orf60
iHOPC5orf60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:23 CEST 2017

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