Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C5orf63 (chromosome 5 open reading frame 63)

Identity

Alias_symbol (synonym)YDR286C
FLJ44606
Other alias
HGNC (Hugo) C5orf63
LocusID (NCBI) 401207
Atlas_Id 61225
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 127051304 and ends at 127073492 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf63   40051
Cards
Entrez_Gene (NCBI)C5orf63  401207  chromosome 5 open reading frame 63
AliasesYDR286C
GeneCards (Weizmann)C5orf63
Ensembl hg19 (Hinxton)ENSG00000164241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164241 [Gene_View]  chr5:127051304-127073492 [Contig_View]  C5orf63 [Vega]
ICGC DataPortalENSG00000164241
TCGA cBioPortalC5orf63
AceView (NCBI)C5orf63
Genatlas (Paris)C5orf63
WikiGenes401207
SOURCE (Princeton)C5orf63
Genetics Home Reference (NIH)C5orf63
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf63  -     chr5:127051304-127073492 -  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf63  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblC5orf63 - 5q23.2 [CytoView hg19]  C5orf63 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIC5orf63 [Mapview hg19]  C5orf63 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126569 BQ269742 DA507232
RefSeq transcript (Entrez)NM_001164478 NM_001164479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf63
Cluster EST : UnigeneHs.49573 [ NCBI ]
CGAP (NCI)Hs.49573
Alternative Splicing GalleryENSG00000164241
Gene ExpressionC5orf63 [ NCBI-GEO ]   C5orf63 [ EBI - ARRAY_EXPRESS ]   C5orf63 [ SEEK ]   C5orf63 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf63 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401207
GTEX Portal (Tissue expression)C5orf63
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC05
Splice isoforms : SwissVarA6NC05
PhosPhoSitePlusA6NC05
Domains : Interpro (EBI)Glutaredoxin-like    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)DUF836 (PF05768)   
Domain families : Pfam (NCBI)pfam05768   
Conserved Domain (NCBI)C5orf63
DMDM Disease mutations401207
Blocks (Seattle)C5orf63
SuperfamilyA6NC05
Human Protein AtlasENSG00000164241
Peptide AtlasA6NC05
IPIIPI00455619   IPI00937668   
Protein Interaction databases
DIP (DOE-UCLA)A6NC05
IntAct (EBI)A6NC05
FunCoupENSG00000164241
BioGRIDC5orf63
STRING (EMBL)C5orf63
ZODIACC5orf63
Ontologies - Pathways
QuickGOA6NC05
Ontology : AmiGOmitochondrion  oxidation-reduction process  
Ontology : EGO-EBImitochondrion  oxidation-reduction process  
NDEx NetworkC5orf63
Atlas of Cancer Signalling NetworkC5orf63
Wikipedia pathwaysC5orf63
Orthology - Evolution
OrthoDB401207
GeneTree (enSembl)ENSG00000164241
Phylogenetic Trees/Animal Genes : TreeFamC5orf63
HOVERGENA6NC05
HOGENOMA6NC05
Homologs : HomoloGeneC5orf63
Homology/Alignments : Family Browser (UCSC)C5orf63
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf63 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf63
dbVarC5orf63
ClinVarC5orf63
1000_GenomesC5orf63 
Exome Variant ServerC5orf63
ExAC (Exome Aggregation Consortium)C5orf63 (select the gene name)
Genetic variants : HAPMAP401207
Genomic Variants (DGV)C5orf63 [DGVbeta]
DECIPHERC5orf63 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf63 
Mutations
ICGC Data PortalC5orf63 
TCGA Data PortalC5orf63 
Broad Tumor PortalC5orf63
OASIS PortalC5orf63 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf63  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf63
BioMutasearch C5orf63
DgiDB (Drug Gene Interaction Database)C5orf63
DoCM (Curated mutations)C5orf63 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf63 (select a term)
intoGenC5orf63
Cancer3DC5orf63(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf63
Genetic Testing Registry C5orf63
NextProtA6NC05 [Medical]
TSGene401207
GENETestsC5orf63
Target ValidationC5orf63
Huge Navigator C5orf63 [HugePedia]
snp3D : Map Gene to Disease401207
BioCentury BCIQC5orf63
ClinGenC5orf63
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401207
Chemical/Pharm GKB GenePA166123668
Clinical trialC5orf63
Miscellaneous
canSAR (ICR)C5orf63 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf63
EVEXC5orf63
GoPubMedC5orf63
iHOPC5orf63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:23 CEST 2017

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