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C5orf64 (chromosome 5 open reading frame 64)

Identity

Alias_symbol (synonym)FLJ37543
Other alias-
HGNC (Hugo) C5orf64
LocusID (NCBI) 285668
Atlas_Id 61226
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 61637781 and ends at 61706535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf64   26744
Cards
Entrez_Gene (NCBI)C5orf64  285668  chromosome 5 open reading frame 64
Aliases
GeneCards (Weizmann)C5orf64
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:61637781-61706535 [Contig_View]  C5orf64 [Vega]
TCGA cBioPortalC5orf64
AceView (NCBI)C5orf64
Genatlas (Paris)C5orf64
WikiGenes285668
SOURCE (Princeton)C5orf64
Genetics Home Reference (NIH)C5orf64
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf64  -     chr5:61637781-61706535 +  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf64  -     5q12.1   [Description]    (hg19-Feb_2009)
EnsemblC5orf64 - 5q12.1 [CytoView hg19]  C5orf64 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf64 [Mapview hg19]  C5orf64 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094862 AK127800 BC111982 BC112008 DA152848
RefSeq transcript (Entrez)NM_173667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf64
Cluster EST : UnigeneHs.683866 [ NCBI ]
CGAP (NCI)Hs.683866
Gene ExpressionC5orf64 [ NCBI-GEO ]   C5orf64 [ EBI - ARRAY_EXPRESS ]   C5orf64 [ SEEK ]   C5orf64 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285668
GTEX Portal (Tissue expression)C5orf64
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2E5
Splice isoforms : SwissVarQ2M2E5
PhosPhoSitePlusQ2M2E5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf64
DMDM Disease mutations285668
Blocks (Seattle)C5orf64
SuperfamilyQ2M2E5
Peptide AtlasQ2M2E5
HPRD09962
IPIIPI00295960   IPI00444016   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2E5
IntAct (EBI)Q2M2E5
BioGRIDC5orf64
STRING (EMBL)C5orf64
ZODIACC5orf64
Ontologies - Pathways
QuickGOQ2M2E5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC5orf64
Atlas of Cancer Signalling NetworkC5orf64
Wikipedia pathwaysC5orf64
Orthology - Evolution
OrthoDB285668
Phylogenetic Trees/Animal Genes : TreeFamC5orf64
HOVERGENQ2M2E5
HOGENOMQ2M2E5
Homologs : HomoloGeneC5orf64
Homology/Alignments : Family Browser (UCSC)C5orf64
Gene fusions - Rearrangements
Fusion: Tumor Portal C5orf64
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf64
dbVarC5orf64
ClinVarC5orf64
1000_GenomesC5orf64 
Exome Variant ServerC5orf64
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP285668
Genomic Variants (DGV)C5orf64 [DGVbeta]
DECIPHERC5orf64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf64 
Mutations
ICGC Data PortalC5orf64 
TCGA Data PortalC5orf64 
Broad Tumor PortalC5orf64
OASIS PortalC5orf64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf64  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf64
DgiDB (Drug Gene Interaction Database)C5orf64
DoCM (Curated mutations)C5orf64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf64 (select a term)
intoGenC5orf64
Cancer3DC5orf64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf64
Genetic Testing Registry C5orf64
NextProtQ2M2E5 [Medical]
TSGene285668
GENETestsC5orf64
Target ValidationC5orf64
Huge Navigator C5orf64 [HugePedia]
snp3D : Map Gene to Disease285668
BioCentury BCIQC5orf64
ClinGenC5orf64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285668
Chemical/Pharm GKB GenePA166048973
Clinical trialC5orf64
Miscellaneous
canSAR (ICR)C5orf64 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf64
EVEXC5orf64
GoPubMedC5orf64
iHOPC5orf64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:40 CET 2017

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