Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C5orf66 (chromosome 5 open reading frame 66)

Identity

Other alias-
HGNC (Hugo) C5orf66
LocusID (NCBI) 100996485
Atlas_Id 61227
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134368970 and ends at 134680370 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf66   48332
Cards
Entrez_Gene (NCBI)C5orf66  100996485  chromosome 5 open reading frame 66
Aliases
GeneCards (Weizmann)C5orf66
Ensembl hg19 (Hinxton) [Gene_View]  chr5:134368970-134680370 [Contig_View]  C5orf66 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:134368970-134680370 [Contig_View]  C5orf66 [Vega]
TCGA cBioPortalC5orf66
AceView (NCBI)C5orf66
Genatlas (Paris)C5orf66
WikiGenes100996485
SOURCE (Princeton)C5orf66
Genetics Home Reference (NIH)C5orf66
Genomic and cartography
GoldenPath hg19 (UCSC)C5orf66  -     chr5:134368970-134680370 +  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C5orf66  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblC5orf66 - 5q31.1 [CytoView hg19]  C5orf66 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf66 [Mapview hg19]  C5orf66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026965 LN608063 LN608064 LN608065 LN608066
RefSeq transcript (Entrez)NM_001277348
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)C5orf66
Gene ExpressionC5orf66 [ NCBI-GEO ]   C5orf66 [ EBI - ARRAY_EXPRESS ]   C5orf66 [ SEEK ]   C5orf66 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996485
GTEX Portal (Tissue expression)C5orf66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5L9
Splice isoforms : SwissVarQ9H5L9
PhosPhoSitePlusQ9H5L9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf66
DMDM Disease mutations100996485
Blocks (Seattle)C5orf66
SuperfamilyQ9H5L9
Peptide AtlasQ9H5L9
Protein Interaction databases
DIP (DOE-UCLA)Q9H5L9
IntAct (EBI)Q9H5L9
BioGRIDC5orf66
STRING (EMBL)C5orf66
ZODIACC5orf66
Ontologies - Pathways
QuickGOQ9H5L9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf66
Atlas of Cancer Signalling NetworkC5orf66
Wikipedia pathwaysC5orf66
Orthology - Evolution
OrthoDB100996485
Phylogenetic Trees/Animal Genes : TreeFamC5orf66
HOVERGENQ9H5L9
HOGENOMQ9H5L9
Homologs : HomoloGeneC5orf66
Homology/Alignments : Family Browser (UCSC)C5orf66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf66
dbVarC5orf66
ClinVarC5orf66
1000_GenomesC5orf66 
Exome Variant ServerC5orf66
ExAC (Exome Aggregation Consortium)C5orf66 (select the gene name)
Genetic variants : HAPMAP100996485
Genomic Variants (DGV)C5orf66 [DGVbeta]
DECIPHER (Syndromes)5:134368970-134680370  
CONAN: Copy Number AnalysisC5orf66 
Mutations
ICGC Data PortalC5orf66 
TCGA Data PortalC5orf66 
Broad Tumor PortalC5orf66
OASIS PortalC5orf66 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC5orf66
BioMutasearch C5orf66
DgiDB (Drug Gene Interaction Database)C5orf66
DoCM (Curated mutations)C5orf66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf66 (select a term)
intoGenC5orf66
Cancer3DC5orf66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf66
Genetic Testing Registry C5orf66
NextProtQ9H5L9 [Medical]
TSGene100996485
GENETestsC5orf66
Huge Navigator C5orf66 [HugePedia]
snp3D : Map Gene to Disease100996485
BioCentury BCIQC5orf66
ClinGenC5orf66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996485
Clinical trialC5orf66
Miscellaneous
canSAR (ICR)C5orf66 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf66
EVEXC5orf66
GoPubMedC5orf66
iHOPC5orf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.