Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C5orf67 (chromosome 5 open reading frame 67)

Identity

Other alias-
HGNC (Hugo) C5orf67
LocusID (NCBI) 101928448
Atlas_Id 77214
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56511394 and ends at 56606232 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf67   51252
Cards
Entrez_Gene (NCBI)C5orf67  101928448  chromosome 5 open reading frame 67
Aliases
GeneCards (Weizmann)C5orf67
Ensembl hg19 (Hinxton)ENSG00000225940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225940 [Gene_View]  chr5:56511394-56606232 [Contig_View]  C5orf67 [Vega]
ICGC DataPortalENSG00000225940
TCGA cBioPortalC5orf67
AceView (NCBI)C5orf67
Genatlas (Paris)C5orf67
WikiGenes101928448
SOURCE (Princeton)C5orf67
Genetics Home Reference (NIH)C5orf67
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf67  -     chr5:56511394-56606232 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf67  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblC5orf67 - 5q11.2 [CytoView hg19]  C5orf67 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIC5orf67 [Mapview hg19]  C5orf67 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX089473
RefSeq transcript (Entrez)NM_001287053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf67
Cluster EST : UnigeneHs.208052 [ NCBI ]
CGAP (NCI)Hs.208052
Alternative Splicing GalleryENSG00000225940
Gene ExpressionC5orf67 [ NCBI-GEO ]   C5orf67 [ EBI - ARRAY_EXPRESS ]   C5orf67 [ SEEK ]   C5orf67 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf67 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928448
GTEX Portal (Tissue expression)C5orf67
Protein : pattern, domain, 3D structure
UniProt/SwissProtF2Z3F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF2Z3F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF2Z3F1
Splice isoforms : SwissVarF2Z3F1
PhosPhoSitePlusF2Z3F1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf67
DMDM Disease mutations101928448
Blocks (Seattle)C5orf67
SuperfamilyF2Z3F1
Human Protein AtlasENSG00000225940
Peptide AtlasF2Z3F1
Protein Interaction databases
DIP (DOE-UCLA)F2Z3F1
IntAct (EBI)F2Z3F1
FunCoupENSG00000225940
BioGRIDC5orf67
STRING (EMBL)C5orf67
ZODIACC5orf67
Ontologies - Pathways
QuickGOF2Z3F1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf67
Atlas of Cancer Signalling NetworkC5orf67
Wikipedia pathwaysC5orf67
Orthology - Evolution
OrthoDB101928448
GeneTree (enSembl)ENSG00000225940
Phylogenetic Trees/Animal Genes : TreeFamC5orf67
HOVERGENF2Z3F1
HOGENOMF2Z3F1
Homologs : HomoloGeneC5orf67
Homology/Alignments : Family Browser (UCSC)C5orf67
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf67
dbVarC5orf67
ClinVarC5orf67
1000_GenomesC5orf67 
Exome Variant ServerC5orf67
ExAC (Exome Aggregation Consortium)C5orf67 (select the gene name)
Genetic variants : HAPMAP101928448
Genomic Variants (DGV)C5orf67 [DGVbeta]
DECIPHERC5orf67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf67 
Mutations
ICGC Data PortalC5orf67 
TCGA Data PortalC5orf67 
Broad Tumor PortalC5orf67
OASIS PortalC5orf67 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC5orf67
BioMutasearch C5orf67
DgiDB (Drug Gene Interaction Database)C5orf67
DoCM (Curated mutations)C5orf67 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf67 (select a term)
intoGenC5orf67
Cancer3DC5orf67(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf67
Genetic Testing Registry C5orf67
NextProtF2Z3F1 [Medical]
TSGene101928448
GENETestsC5orf67
Huge Navigator C5orf67 [HugePedia]
snp3D : Map Gene to Disease101928448
BioCentury BCIQC5orf67
ClinGenC5orf67
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928448
Clinical trialC5orf67
Miscellaneous
canSAR (ICR)C5orf67 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf67
EVEXC5orf67
GoPubMedC5orf67
iHOPC5orf67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:03:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.