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C6orf10 (chromosome 6 open reading frame 10)

Identity

Alias_symbol (synonym)TSBP
Other alias
HGNC (Hugo) C6orf10
LocusID (NCBI) 10665
Atlas_Id 61232
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32292698 and ends at 32371912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGBL2 (11p11.2) / C6orf10 (6p21.32)FIBIN (11p14.2) / C6orf10 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf10   13922
Cards
Entrez_Gene (NCBI)C6orf10  10665  chromosome 6 open reading frame 10
AliasesTSBP
GeneCards (Weizmann)C6orf10
Ensembl hg19 (Hinxton)ENSG00000204296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204296 [Gene_View]  ENSG00000204296 [Sequence]  chr6:32292698-32371912 [Contig_View]  C6orf10 [Vega]
ICGC DataPortalENSG00000204296
TCGA cBioPortalC6orf10
AceView (NCBI)C6orf10
Genatlas (Paris)C6orf10
WikiGenes10665
SOURCE (Princeton)C6orf10
Genetics Home Reference (NIH)C6orf10
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf10  -     chr6:32292698-32371912 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf10  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblC6orf10 - 6p21.32 [CytoView hg19]  C6orf10 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIC6orf10 [Mapview hg19]  C6orf10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK225742 AK302176 AK310230 BC034774 BX113229
RefSeq transcript (Entrez)NM_001286474 NM_001286475 NM_006781
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)C6orf10
Cluster EST : UnigeneHs.567414 [ NCBI ]
CGAP (NCI)Hs.567414
Alternative Splicing GalleryENSG00000204296
Gene ExpressionC6orf10 [ NCBI-GEO ]   C6orf10 [ EBI - ARRAY_EXPRESS ]   C6orf10 [ SEEK ]   C6orf10 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10665
GTEX Portal (Tissue expression)C6orf10
Human Protein AtlasENSG00000204296-C6orf10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SRN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SRN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SRN2
Splice isoforms : SwissVarQ5SRN2
PhosPhoSitePlusQ5SRN2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf10
DMDM Disease mutations10665
Blocks (Seattle)C6orf10
SuperfamilyQ5SRN2
Human Protein Atlas [tissue]ENSG00000204296-C6orf10 [tissue]
Peptide AtlasQ5SRN2
HPRD09851
IPIIPI00171063   IPI00607606   IPI00940678   IPI00939175   IPI01011181   IPI01024747   IPI00009536   IPI00954517   IPI00749358   IPI00894563   IPI00894429   IPI00893974   IPI00893139   IPI00892626   IPI00893438   IPI00973714   IPI00976705   IPI00976293   IPI00975675   IPI00977413   
Protein Interaction databases
DIP (DOE-UCLA)Q5SRN2
IntAct (EBI)Q5SRN2
FunCoupENSG00000204296
BioGRIDC6orf10
STRING (EMBL)C6orf10
ZODIACC6orf10
Ontologies - Pathways
QuickGOQ5SRN2
Ontology : AmiGOnucleus  integral component of membrane  
Ontology : EGO-EBInucleus  integral component of membrane  
NDEx NetworkC6orf10
Atlas of Cancer Signalling NetworkC6orf10
Wikipedia pathwaysC6orf10
Orthology - Evolution
OrthoDB10665
GeneTree (enSembl)ENSG00000204296
Phylogenetic Trees/Animal Genes : TreeFamC6orf10
HOVERGENQ5SRN2
HOGENOMQ5SRN2
Homologs : HomoloGeneC6orf10
Homology/Alignments : Family Browser (UCSC)C6orf10
Gene fusions - Rearrangements
Fusion : QuiverC6orf10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf10
dbVarC6orf10
ClinVarC6orf10
1000_GenomesC6orf10 
Exome Variant ServerC6orf10
ExAC (Exome Aggregation Consortium)ENSG00000204296
GNOMAD BrowserENSG00000204296
Varsome BrowserC6orf10
Genetic variants : HAPMAP10665
Genomic Variants (DGV)C6orf10 [DGVbeta]
DECIPHERC6orf10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf10 
Mutations
ICGC Data PortalC6orf10 
TCGA Data PortalC6orf10 
Broad Tumor PortalC6orf10
OASIS PortalC6orf10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf10
DgiDB (Drug Gene Interaction Database)C6orf10
DoCM (Curated mutations)C6orf10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf10 (select a term)
intoGenC6orf10
Cancer3DC6orf10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf10
MedgenC6orf10
Genetic Testing Registry C6orf10
NextProtQ5SRN2 [Medical]
TSGene10665
GENETestsC6orf10
Target ValidationC6orf10
Huge Navigator C6orf10 [HugePedia]
snp3D : Map Gene to Disease10665
BioCentury BCIQC6orf10
ClinGenC6orf10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10665
Chemical/Pharm GKB GenePA25923
Clinical trialC6orf10
Miscellaneous
canSAR (ICR)C6orf10 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf10
EVEXC6orf10
GoPubMedC6orf10
iHOPC6orf10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:36 CEST 2018

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