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C6orf118 (chromosome 6 open reading frame 118)

Identity

Alias_symbol (synonym)MGC23884
bA85G2.1
Other aliasdJ416F21.2
HGNC (Hugo) C6orf118
LocusID (NCBI) 168090
Atlas_Id 61233
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 165279664 and ends at 165309622 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf118   21233
Cards
Entrez_Gene (NCBI)C6orf118  168090  chromosome 6 open reading frame 118
AliasesbA85G2.1; dJ416F21.2
GeneCards (Weizmann)C6orf118
Ensembl hg19 (Hinxton)ENSG00000112539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112539 [Gene_View]  ENSG00000112539 [Sequence]  chr6:165279664-165309622 [Contig_View]  C6orf118 [Vega]
ICGC DataPortalENSG00000112539
TCGA cBioPortalC6orf118
AceView (NCBI)C6orf118
Genatlas (Paris)C6orf118
WikiGenes168090
SOURCE (Princeton)C6orf118
Genetics Home Reference (NIH)C6orf118
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf118  -     chr6:165279664-165309622 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf118  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblC6orf118 - 6q27 [CytoView hg19]  C6orf118 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIC6orf118 [Mapview hg19]  C6orf118 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI333765 AK302358 BC026278 BM968092 DB454755
RefSeq transcript (Entrez)NM_144980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf118
Cluster EST : UnigeneHs.144734 [ NCBI ]
CGAP (NCI)Hs.144734
Alternative Splicing GalleryENSG00000112539
Gene ExpressionC6orf118 [ NCBI-GEO ]   C6orf118 [ EBI - ARRAY_EXPRESS ]   C6orf118 [ SEEK ]   C6orf118 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf118 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168090
GTEX Portal (Tissue expression)C6orf118
Human Protein AtlasENSG00000112539-C6orf118 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5N4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5N4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5N4
Splice isoforms : SwissVarQ5T5N4
PhosPhoSitePlusQ5T5N4
Domains : Interpro (EBI)TSNAXIP1_N   
Domain families : Pfam (Sanger)TSNAXIP1_N (PF15739)   
Domain families : Pfam (NCBI)pfam15739   
Conserved Domain (NCBI)C6orf118
DMDM Disease mutations168090
Blocks (Seattle)C6orf118
SuperfamilyQ5T5N4
Human Protein Atlas [tissue]ENSG00000112539-C6orf118 [tissue]
Peptide AtlasQ5T5N4
HPRD12844
IPIIPI00290848   IPI00922482   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5N4
IntAct (EBI)Q5T5N4
FunCoupENSG00000112539
BioGRIDC6orf118
STRING (EMBL)C6orf118
ZODIACC6orf118
Ontologies - Pathways
QuickGOQ5T5N4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf118
Atlas of Cancer Signalling NetworkC6orf118
Wikipedia pathwaysC6orf118
Orthology - Evolution
OrthoDB168090
GeneTree (enSembl)ENSG00000112539
Phylogenetic Trees/Animal Genes : TreeFamC6orf118
HOVERGENQ5T5N4
HOGENOMQ5T5N4
Homologs : HomoloGeneC6orf118
Homology/Alignments : Family Browser (UCSC)C6orf118
Gene fusions - Rearrangements
Fusion : QuiverC6orf118
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf118 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf118
dbVarC6orf118
ClinVarC6orf118
1000_GenomesC6orf118 
Exome Variant ServerC6orf118
ExAC (Exome Aggregation Consortium)ENSG00000112539
GNOMAD BrowserENSG00000112539
Varsome BrowserC6orf118
Genetic variants : HAPMAP168090
Genomic Variants (DGV)C6orf118 [DGVbeta]
DECIPHERC6orf118 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf118 
Mutations
ICGC Data PortalC6orf118 
TCGA Data PortalC6orf118 
Broad Tumor PortalC6orf118
OASIS PortalC6orf118 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf118  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf118
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf118
DgiDB (Drug Gene Interaction Database)C6orf118
DoCM (Curated mutations)C6orf118 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf118 (select a term)
intoGenC6orf118
Cancer3DC6orf118(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf118
MedgenC6orf118
Genetic Testing Registry C6orf118
NextProtQ5T5N4 [Medical]
TSGene168090
GENETestsC6orf118
Target ValidationC6orf118
Huge Navigator C6orf118 [HugePedia]
snp3D : Map Gene to Disease168090
BioCentury BCIQC6orf118
ClinGenC6orf118
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168090
Chemical/Pharm GKB GenePA134954942
Clinical trialC6orf118
Miscellaneous
canSAR (ICR)C6orf118 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf118
EVEXC6orf118
GoPubMedC6orf118
iHOPC6orf118
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:36 CEST 2018

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