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C6orf120 (chromosome 6 open reading frame 120)

Identity

Alias_symbol (synonym)bA160E12.4
Other alias-
HGNC (Hugo) C6orf120
LocusID (NCBI) 387263
Atlas_Id 61234
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 169702112 and ends at 169706357 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf120 (6q27) / FGD1 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf120   21247
Cards
Entrez_Gene (NCBI)C6orf120  387263  chromosome 6 open reading frame 120
Aliases
GeneCards (Weizmann)C6orf120
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:169702112-169706357 [Contig_View]  C6orf120 [Vega]
TCGA cBioPortalC6orf120
AceView (NCBI)C6orf120
Genatlas (Paris)C6orf120
WikiGenes387263
SOURCE (Princeton)C6orf120
Genetics Home Reference (NIH)C6orf120
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf120  -     chr6:169702112-169706357 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf120  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblC6orf120 - 6q27 [CytoView hg19]  C6orf120 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIC6orf120 [Mapview hg19]  C6orf120 [Mapview hg38]
OMIM616987   
Gene and transcription
Genbank (Entrez)AF055030 AF451991 AI768935 AK295061 AK295962
RefSeq transcript (Entrez)NM_001029863 NM_001317342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf120
Cluster EST : UnigeneHs.694601 [ NCBI ]
CGAP (NCI)Hs.694601
Gene ExpressionC6orf120 [ NCBI-GEO ]   C6orf120 [ EBI - ARRAY_EXPRESS ]   C6orf120 [ SEEK ]   C6orf120 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf120 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387263
GTEX Portal (Tissue expression)C6orf120
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4R8
Splice isoforms : SwissVarQ7Z4R8
PhosPhoSitePlusQ7Z4R8
Domains : Interpro (EBI)UPF0669   
Domain families : Pfam (Sanger)UPF0669 (PF17065)   
Domain families : Pfam (NCBI)pfam17065   
Conserved Domain (NCBI)C6orf120
DMDM Disease mutations387263
Blocks (Seattle)C6orf120
SuperfamilyQ7Z4R8
Peptide AtlasQ7Z4R8
IPIIPI00939281   IPI00376035   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4R8
IntAct (EBI)Q7Z4R8
BioGRIDC6orf120
STRING (EMBL)C6orf120
ZODIACC6orf120
Ontologies - Pathways
QuickGOQ7Z4R8
Ontology : AmiGOextracellular region  apoptotic process  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBIextracellular region  apoptotic process  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
NDEx NetworkC6orf120
Atlas of Cancer Signalling NetworkC6orf120
Wikipedia pathwaysC6orf120
Orthology - Evolution
OrthoDB387263
Phylogenetic Trees/Animal Genes : TreeFamC6orf120
HOVERGENQ7Z4R8
HOGENOMQ7Z4R8
Homologs : HomoloGeneC6orf120
Homology/Alignments : Family Browser (UCSC)C6orf120
Gene fusions - Rearrangements
Fusion : QuiverC6orf120
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf120 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf120
dbVarC6orf120
ClinVarC6orf120
1000_GenomesC6orf120 
Exome Variant ServerC6orf120
Varsome BrowserC6orf120
Genetic variants : HAPMAP387263
Genomic Variants (DGV)C6orf120 [DGVbeta]
DECIPHERC6orf120 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf120 
Mutations
ICGC Data PortalC6orf120 
TCGA Data PortalC6orf120 
Broad Tumor PortalC6orf120
OASIS PortalC6orf120 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf120  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf120
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf120
DgiDB (Drug Gene Interaction Database)C6orf120
DoCM (Curated mutations)C6orf120 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf120 (select a term)
intoGenC6orf120
Cancer3DC6orf120(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616987   
Orphanet
DisGeNETC6orf120
MedgenC6orf120
Genetic Testing Registry C6orf120
NextProtQ7Z4R8 [Medical]
TSGene387263
GENETestsC6orf120
Target ValidationC6orf120
Huge Navigator C6orf120 [HugePedia]
snp3D : Map Gene to Disease387263
BioCentury BCIQC6orf120
ClinGenC6orf120
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387263
Chemical/Pharm GKB GenePA134992326
Clinical trialC6orf120
Miscellaneous
canSAR (ICR)C6orf120 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf120
EVEXC6orf120
GoPubMedC6orf120
iHOPC6orf120
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:36 CEST 2018

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