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C6orf132 (chromosome 6 open reading frame 132)

Identity

Alias_symbol (synonym)bA7K24.2
Other alias
HGNC (Hugo) C6orf132
LocusID (NCBI) 647024
Atlas_Id 61235
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42101119 and ends at 42142977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf132 (6p21.1) / GUCA1B (6p21.1)C6orf132 (6p21.1) / LOC100507246 ()DERL1 (8q24.13) / C6orf132 (6p21.1)
SPOP (17q21.33) / C6orf132 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;6)(p21;p21) C6orf132/GUCA1B
t(6;8)(p21;q24) DERL1/C6orf132


External links

Nomenclature
HGNC (Hugo)C6orf132   21288
Cards
Entrez_Gene (NCBI)C6orf132  647024  chromosome 6 open reading frame 132
AliasesbA7K24.2
GeneCards (Weizmann)C6orf132
Ensembl hg19 (Hinxton)ENSG00000188112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188112 [Gene_View]  ENSG00000188112 [Sequence]  chr6:42101119-42142977 [Contig_View]  C6orf132 [Vega]
ICGC DataPortalENSG00000188112
TCGA cBioPortalC6orf132
AceView (NCBI)C6orf132
Genatlas (Paris)C6orf132
WikiGenes647024
SOURCE (Princeton)C6orf132
Genetics Home Reference (NIH)C6orf132
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf132  -     chr6:42101119-42142977 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf132  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblC6orf132 - 6p21.1 [CytoView hg19]  C6orf132 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIC6orf132 [Mapview hg19]  C6orf132 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074567
RefSeq transcript (Entrez)NM_001164446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf132
Cluster EST : UnigeneHs.444277 [ NCBI ]
CGAP (NCI)Hs.444277
Alternative Splicing GalleryENSG00000188112
Gene ExpressionC6orf132 [ NCBI-GEO ]   C6orf132 [ EBI - ARRAY_EXPRESS ]   C6orf132 [ SEEK ]   C6orf132 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf132 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647024
GTEX Portal (Tissue expression)C6orf132
Human Protein AtlasENSG00000188112-C6orf132 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0Z8
Splice isoforms : SwissVarQ5T0Z8
PhosPhoSitePlusQ5T0Z8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf132
DMDM Disease mutations647024
Blocks (Seattle)C6orf132
SuperfamilyQ5T0Z8
Human Protein Atlas [tissue]ENSG00000188112-C6orf132 [tissue]
Peptide AtlasQ5T0Z8
IPIIPI00896427   IPI00896368   IPI01008802   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0Z8
IntAct (EBI)Q5T0Z8
FunCoupENSG00000188112
BioGRIDC6orf132
STRING (EMBL)C6orf132
ZODIACC6orf132
Ontologies - Pathways
QuickGOQ5T0Z8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf132
Atlas of Cancer Signalling NetworkC6orf132
Wikipedia pathwaysC6orf132
Orthology - Evolution
OrthoDB647024
GeneTree (enSembl)ENSG00000188112
Phylogenetic Trees/Animal Genes : TreeFamC6orf132
HOVERGENQ5T0Z8
HOGENOMQ5T0Z8
Homologs : HomoloGeneC6orf132
Homology/Alignments : Family Browser (UCSC)C6orf132
Gene fusions - Rearrangements
Fusion : QuiverC6orf132
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf132 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf132
dbVarC6orf132
ClinVarC6orf132
1000_GenomesC6orf132 
Exome Variant ServerC6orf132
ExAC (Exome Aggregation Consortium)ENSG00000188112
GNOMAD BrowserENSG00000188112
Varsome BrowserC6orf132
Genetic variants : HAPMAP647024
Genomic Variants (DGV)C6orf132 [DGVbeta]
DECIPHERC6orf132 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf132 
Mutations
ICGC Data PortalC6orf132 
TCGA Data PortalC6orf132 
Broad Tumor PortalC6orf132
OASIS PortalC6orf132 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf132  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf132
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf132
DgiDB (Drug Gene Interaction Database)C6orf132
DoCM (Curated mutations)C6orf132 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf132 (select a term)
intoGenC6orf132
Cancer3DC6orf132(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf132
MedgenC6orf132
Genetic Testing Registry C6orf132
NextProtQ5T0Z8 [Medical]
TSGene647024
GENETestsC6orf132
Target ValidationC6orf132
Huge Navigator C6orf132 [HugePedia]
snp3D : Map Gene to Disease647024
BioCentury BCIQC6orf132
ClinGenC6orf132
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647024
Chemical/Pharm GKB GenePA134935851
Clinical trialC6orf132
Miscellaneous
canSAR (ICR)C6orf132 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf132
EVEXC6orf132
GoPubMedC6orf132
iHOPC6orf132
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:36 CEST 2018

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