Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C6orf136 (chromosome 6 open reading frame 136)

Identity

Alias_symbol (synonym)Em:AB023049.8
Other alias-
HGNC (Hugo) C6orf136
LocusID (NCBI) 221545
Atlas_Id 53208
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30647039 and ends at 30653210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf136   21301
Cards
Entrez_Gene (NCBI)C6orf136  221545  chromosome 6 open reading frame 136
Aliases
GeneCards (Weizmann)C6orf136
Ensembl hg19 (Hinxton)ENSG00000204564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204564 [Gene_View]  ENSG00000204564 [Sequence]  chr6:30647039-30653210 [Contig_View]  C6orf136 [Vega]
ICGC DataPortalENSG00000204564
TCGA cBioPortalC6orf136
AceView (NCBI)C6orf136
Genatlas (Paris)C6orf136
WikiGenes221545
SOURCE (Princeton)C6orf136
Genetics Home Reference (NIH)C6orf136
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf136  -     chr6:30647039-30653210 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf136  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblC6orf136 - 6p21.33 [CytoView hg19]  C6orf136 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIC6orf136 [Mapview hg19]  C6orf136 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI536982 AK127564 BC016167 BC064397 BC073975
RefSeq transcript (Entrez)NM_001109938 NM_001161376 NM_145029
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)C6orf136
Cluster EST : UnigeneHs.591787 [ NCBI ]
CGAP (NCI)Hs.591787
Alternative Splicing GalleryENSG00000204564
Gene ExpressionC6orf136 [ NCBI-GEO ]   C6orf136 [ EBI - ARRAY_EXPRESS ]   C6orf136 [ SEEK ]   C6orf136 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf136 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221545
GTEX Portal (Tissue expression)C6orf136
Human Protein AtlasENSG00000204564-C6orf136 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQH8
Splice isoforms : SwissVarQ5SQH8
PhosPhoSitePlusQ5SQH8
Domains : Interpro (EBI)DUF2358   
Domain families : Pfam (Sanger)DUF2358 (PF10184)   
Domain families : Pfam (NCBI)pfam10184   
Conserved Domain (NCBI)C6orf136
DMDM Disease mutations221545
Blocks (Seattle)C6orf136
SuperfamilyQ5SQH8
Human Protein Atlas [tissue]ENSG00000204564-C6orf136 [tissue]
Peptide AtlasQ5SQH8
HPRD12851
IPIIPI00163387   IPI00619974   IPI00514410   IPI01021935   IPI00872818   IPI00945107   IPI00946850   IPI00944943   IPI00946117   IPI00945939   IPI00946663   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQH8
IntAct (EBI)Q5SQH8
FunCoupENSG00000204564
BioGRIDC6orf136
STRING (EMBL)C6orf136
ZODIACC6orf136
Ontologies - Pathways
QuickGOQ5SQH8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf136
Atlas of Cancer Signalling NetworkC6orf136
Wikipedia pathwaysC6orf136
Orthology - Evolution
OrthoDB221545
GeneTree (enSembl)ENSG00000204564
Phylogenetic Trees/Animal Genes : TreeFamC6orf136
HOVERGENQ5SQH8
HOGENOMQ5SQH8
Homologs : HomoloGeneC6orf136
Homology/Alignments : Family Browser (UCSC)C6orf136
Gene fusions - Rearrangements
Fusion : QuiverC6orf136
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf136 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf136
dbVarC6orf136
ClinVarC6orf136
1000_GenomesC6orf136 
Exome Variant ServerC6orf136
ExAC (Exome Aggregation Consortium)ENSG00000204564
GNOMAD BrowserENSG00000204564
Varsome BrowserC6orf136
Genetic variants : HAPMAP221545
Genomic Variants (DGV)C6orf136 [DGVbeta]
DECIPHERC6orf136 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf136 
Mutations
ICGC Data PortalC6orf136 
TCGA Data PortalC6orf136 
Broad Tumor PortalC6orf136
OASIS PortalC6orf136 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf136  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf136
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C6orf136
DgiDB (Drug Gene Interaction Database)C6orf136
DoCM (Curated mutations)C6orf136 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf136 (select a term)
intoGenC6orf136
Cancer3DC6orf136(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf136
MedgenC6orf136
Genetic Testing Registry C6orf136
NextProtQ5SQH8 [Medical]
TSGene221545
GENETestsC6orf136
Target ValidationC6orf136
Huge Navigator C6orf136 [HugePedia]
snp3D : Map Gene to Disease221545
BioCentury BCIQC6orf136
ClinGenC6orf136
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221545
Chemical/Pharm GKB GenePA134962744
Clinical trialC6orf136
Miscellaneous
canSAR (ICR)C6orf136 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf136
EVEXC6orf136
GoPubMedC6orf136
iHOPC6orf136
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:55:08 CET 2018

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