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C6orf141 (chromosome 6 open reading frame 141)

Identity

Alias_symbol (synonym)MGC46457
Other alias-
HGNC (Hugo) C6orf141
LocusID (NCBI) 135398
Atlas_Id 61236
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 49550400 and ends at 49552095 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf141   21351
Cards
Entrez_Gene (NCBI)C6orf141  135398  chromosome 6 open reading frame 141
Aliases
GeneCards (Weizmann)C6orf141
Ensembl hg19 (Hinxton)ENSG00000197261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197261 [Gene_View]  ENSG00000197261 [Sequence]  chr6:49550400-49552095 [Contig_View]  C6orf141 [Vega]
ICGC DataPortalENSG00000197261
TCGA cBioPortalC6orf141
AceView (NCBI)C6orf141
Genatlas (Paris)C6orf141
WikiGenes135398
SOURCE (Princeton)C6orf141
Genetics Home Reference (NIH)C6orf141
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf141  -     chr6:49550400-49552095 +  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf141  -     6p12.3   [Description]    (hg19-Feb_2009)
EnsemblC6orf141 - 6p12.3 [CytoView hg19]  C6orf141 - 6p12.3 [CytoView hg38]
Mapping of homologs : NCBIC6orf141 [Mapview hg19]  C6orf141 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054918 AK289889 BC036917 CN345508
RefSeq transcript (Entrez)NM_001145652 NM_153344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf141
Cluster EST : UnigeneHs.722010 [ NCBI ]
CGAP (NCI)Hs.722010
Alternative Splicing GalleryENSG00000197261
Gene ExpressionC6orf141 [ NCBI-GEO ]   C6orf141 [ EBI - ARRAY_EXPRESS ]   C6orf141 [ SEEK ]   C6orf141 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf141 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135398
GTEX Portal (Tissue expression)C6orf141
Human Protein AtlasENSG00000197261-C6orf141 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZD1
Splice isoforms : SwissVarQ5SZD1
PhosPhoSitePlusQ5SZD1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf141
DMDM Disease mutations135398
Blocks (Seattle)C6orf141
SuperfamilyQ5SZD1
Human Protein Atlas [tissue]ENSG00000197261-C6orf141 [tissue]
Peptide AtlasQ5SZD1
HPRD12852
IPIIPI00059639   IPI00982964   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZD1
IntAct (EBI)Q5SZD1
FunCoupENSG00000197261
BioGRIDC6orf141
STRING (EMBL)C6orf141
ZODIACC6orf141
Ontologies - Pathways
QuickGOQ5SZD1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf141
Atlas of Cancer Signalling NetworkC6orf141
Wikipedia pathwaysC6orf141
Orthology - Evolution
OrthoDB135398
GeneTree (enSembl)ENSG00000197261
Phylogenetic Trees/Animal Genes : TreeFamC6orf141
HOVERGENQ5SZD1
HOGENOMQ5SZD1
Homologs : HomoloGeneC6orf141
Homology/Alignments : Family Browser (UCSC)C6orf141
Gene fusions - Rearrangements
Fusion : QuiverC6orf141
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf141 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf141
dbVarC6orf141
ClinVarC6orf141
1000_GenomesC6orf141 
Exome Variant ServerC6orf141
ExAC (Exome Aggregation Consortium)ENSG00000197261
GNOMAD BrowserENSG00000197261
Varsome BrowserC6orf141
Genetic variants : HAPMAP135398
Genomic Variants (DGV)C6orf141 [DGVbeta]
DECIPHERC6orf141 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf141 
Mutations
ICGC Data PortalC6orf141 
TCGA Data PortalC6orf141 
Broad Tumor PortalC6orf141
OASIS PortalC6orf141 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf141  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf141
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf141
DgiDB (Drug Gene Interaction Database)C6orf141
DoCM (Curated mutations)C6orf141 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf141 (select a term)
intoGenC6orf141
Cancer3DC6orf141(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf141
MedgenC6orf141
Genetic Testing Registry C6orf141
NextProtQ5SZD1 [Medical]
TSGene135398
GENETestsC6orf141
Target ValidationC6orf141
Huge Navigator C6orf141 [HugePedia]
snp3D : Map Gene to Disease135398
BioCentury BCIQC6orf141
ClinGenC6orf141
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135398
Chemical/Pharm GKB GenePA134885117
Clinical trialC6orf141
Miscellaneous
canSAR (ICR)C6orf141 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf141
EVEXC6orf141
GoPubMedC6orf141
iHOPC6orf141
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:37 CEST 2018

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