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C6orf15 (chromosome 6 open reading frame 15)

Identity

Alias_symbol (synonym)STG
Other alias
HGNC (Hugo) C6orf15
LocusID (NCBI) 29113
Atlas_Id 61237
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31111223 and ends at 31112555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf15   13927
Cards
Entrez_Gene (NCBI)C6orf15  29113  chromosome 6 open reading frame 15
AliasesSTG
GeneCards (Weizmann)C6orf15
Ensembl hg19 (Hinxton)ENSG00000204542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204542 [Gene_View]  ENSG00000204542 [Sequence]  chr6:31111223-31112555 [Contig_View]  C6orf15 [Vega]
ICGC DataPortalENSG00000204542
TCGA cBioPortalC6orf15
AceView (NCBI)C6orf15
Genatlas (Paris)C6orf15
WikiGenes29113
SOURCE (Princeton)C6orf15
Genetics Home Reference (NIH)C6orf15
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf15  -     chr6:31111223-31112555 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf15  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblC6orf15 - 6p21.33 [CytoView hg19]  C6orf15 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIC6orf15 [Mapview hg19]  C6orf15 [Mapview hg38]
OMIM611401   
Gene and transcription
Genbank (Entrez)AB031481 AY358438 BC146374 BC153157
RefSeq transcript (Entrez)NM_014070
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_021348 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)C6orf15
Cluster EST : UnigeneHs.272214 [ NCBI ]
CGAP (NCI)Hs.272214
Alternative Splicing GalleryENSG00000204542
Gene ExpressionC6orf15 [ NCBI-GEO ]   C6orf15 [ EBI - ARRAY_EXPRESS ]   C6orf15 [ SEEK ]   C6orf15 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29113
GTEX Portal (Tissue expression)C6orf15
Human Protein AtlasENSG00000204542-C6orf15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXA7
Splice isoforms : SwissVarQ6UXA7
PhosPhoSitePlusQ6UXA7
Domains : Interpro (EBI)C6orf15   
Domain families : Pfam (Sanger)STG (PF15809)   
Domain families : Pfam (NCBI)pfam15809   
Conserved Domain (NCBI)C6orf15
DMDM Disease mutations29113
Blocks (Seattle)C6orf15
SuperfamilyQ6UXA7
Human Protein Atlas [tissue]ENSG00000204542-C6orf15 [tissue]
Peptide AtlasQ6UXA7
HPRD12856
IPIIPI00022381   IPI00847331   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXA7
IntAct (EBI)Q6UXA7
FunCoupENSG00000204542
BioGRIDC6orf15
STRING (EMBL)C6orf15
ZODIACC6orf15
Ontologies - Pathways
QuickGOQ6UXA7
Ontology : AmiGOfibronectin binding  molecular_function  hyaluronic acid binding  cellular_component  interstitial matrix  biological_process  heparin binding  extracellular matrix organization  laminin binding  collagen V binding  
Ontology : EGO-EBIfibronectin binding  molecular_function  hyaluronic acid binding  cellular_component  interstitial matrix  biological_process  heparin binding  extracellular matrix organization  laminin binding  collagen V binding  
NDEx NetworkC6orf15
Atlas of Cancer Signalling NetworkC6orf15
Wikipedia pathwaysC6orf15
Orthology - Evolution
OrthoDB29113
GeneTree (enSembl)ENSG00000204542
Phylogenetic Trees/Animal Genes : TreeFamC6orf15
HOVERGENQ6UXA7
HOGENOMQ6UXA7
Homologs : HomoloGeneC6orf15
Homology/Alignments : Family Browser (UCSC)C6orf15
Gene fusions - Rearrangements
Fusion : QuiverC6orf15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf15
dbVarC6orf15
ClinVarC6orf15
1000_GenomesC6orf15 
Exome Variant ServerC6orf15
ExAC (Exome Aggregation Consortium)ENSG00000204542
GNOMAD BrowserENSG00000204542
Varsome BrowserC6orf15
Genetic variants : HAPMAP29113
Genomic Variants (DGV)C6orf15 [DGVbeta]
DECIPHERC6orf15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf15 
Mutations
ICGC Data PortalC6orf15 
TCGA Data PortalC6orf15 
Broad Tumor PortalC6orf15
OASIS PortalC6orf15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf15
DgiDB (Drug Gene Interaction Database)C6orf15
DoCM (Curated mutations)C6orf15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf15 (select a term)
intoGenC6orf15
Cancer3DC6orf15(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611401   
Orphanet
DisGeNETC6orf15
MedgenC6orf15
Genetic Testing Registry C6orf15
NextProtQ6UXA7 [Medical]
TSGene29113
GENETestsC6orf15
Target ValidationC6orf15
Huge Navigator C6orf15 [HugePedia]
snp3D : Map Gene to Disease29113
BioCentury BCIQC6orf15
ClinGenC6orf15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29113
Chemical/Pharm GKB GenePA134866404
Clinical trialC6orf15
Miscellaneous
canSAR (ICR)C6orf15 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf15
EVEXC6orf15
GoPubMedC6orf15
iHOPC6orf15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:37 CEST 2018

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