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C6orf163 (chromosome 6 open reading frame 163)

Identity

Other alias-
HGNC (Hugo) C6orf163
LocusID (NCBI) 206412
Atlas_Id 61238
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 87344853 and ends at 87365463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf163   21403
Cards
Entrez_Gene (NCBI)C6orf163  206412  chromosome 6 open reading frame 163
Aliases
GeneCards (Weizmann)C6orf163
Ensembl hg19 (Hinxton)ENSG00000203872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203872 [Gene_View]  ENSG00000203872 [Sequence]  chr6:87344853-87365463 [Contig_View]  C6orf163 [Vega]
ICGC DataPortalENSG00000203872
TCGA cBioPortalC6orf163
AceView (NCBI)C6orf163
Genatlas (Paris)C6orf163
WikiGenes206412
SOURCE (Princeton)C6orf163
Genetics Home Reference (NIH)C6orf163
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf163  -     chr6:87344853-87365463 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf163  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblC6orf163 - 6q15 [CytoView hg19]  C6orf163 - 6q15 [CytoView hg38]
Mapping of homologs : NCBIC6orf163 [Mapview hg19]  C6orf163 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057638 AK092941 BC044236
RefSeq transcript (Entrez)NM_001010868
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf163
Cluster EST : UnigeneHs.667286 [ NCBI ]
CGAP (NCI)Hs.667286
Alternative Splicing GalleryENSG00000203872
Gene ExpressionC6orf163 [ NCBI-GEO ]   C6orf163 [ EBI - ARRAY_EXPRESS ]   C6orf163 [ SEEK ]   C6orf163 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf163 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)206412
GTEX Portal (Tissue expression)C6orf163
Human Protein AtlasENSG00000203872-C6orf163 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TEZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TEZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TEZ5
Splice isoforms : SwissVarQ5TEZ5
PhosPhoSitePlusQ5TEZ5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf163
DMDM Disease mutations206412
Blocks (Seattle)C6orf163
SuperfamilyQ5TEZ5
Human Protein Atlas [tissue]ENSG00000203872-C6orf163 [tissue]
Peptide AtlasQ5TEZ5
HPRD16659
IPIIPI00783612   
Protein Interaction databases
DIP (DOE-UCLA)Q5TEZ5
IntAct (EBI)Q5TEZ5
FunCoupENSG00000203872
BioGRIDC6orf163
STRING (EMBL)C6orf163
ZODIACC6orf163
Ontologies - Pathways
QuickGOQ5TEZ5
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC6orf163
Atlas of Cancer Signalling NetworkC6orf163
Wikipedia pathwaysC6orf163
Orthology - Evolution
OrthoDB206412
GeneTree (enSembl)ENSG00000203872
Phylogenetic Trees/Animal Genes : TreeFamC6orf163
HOVERGENQ5TEZ5
HOGENOMQ5TEZ5
Homologs : HomoloGeneC6orf163
Homology/Alignments : Family Browser (UCSC)C6orf163
Gene fusions - Rearrangements
Fusion : QuiverC6orf163
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf163 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf163
dbVarC6orf163
ClinVarC6orf163
1000_GenomesC6orf163 
Exome Variant ServerC6orf163
ExAC (Exome Aggregation Consortium)ENSG00000203872
GNOMAD BrowserENSG00000203872
Varsome BrowserC6orf163
Genetic variants : HAPMAP206412
Genomic Variants (DGV)C6orf163 [DGVbeta]
DECIPHERC6orf163 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf163 
Mutations
ICGC Data PortalC6orf163 
TCGA Data PortalC6orf163 
Broad Tumor PortalC6orf163
OASIS PortalC6orf163 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf163  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf163
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf163
DgiDB (Drug Gene Interaction Database)C6orf163
DoCM (Curated mutations)C6orf163 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf163 (select a term)
intoGenC6orf163
Cancer3DC6orf163(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf163
MedgenC6orf163
Genetic Testing Registry C6orf163
NextProtQ5TEZ5 [Medical]
TSGene206412
GENETestsC6orf163
Target ValidationC6orf163
Huge Navigator C6orf163 [HugePedia]
snp3D : Map Gene to Disease206412
BioCentury BCIQC6orf163
ClinGenC6orf163
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD206412
Chemical/Pharm GKB GenePA134938121
Clinical trialC6orf163
Miscellaneous
canSAR (ICR)C6orf163 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf163
EVEXC6orf163
GoPubMedC6orf163
iHOPC6orf163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:37 CEST 2018

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