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C6orf183 (chromosome 6 open reading frame 183)

Identity

Alias_symbol (synonym)bA487F23.3
Other alias-
HGNC (Hugo) C6orf183
LocusID (NCBI) 100996634
Atlas_Id 79720
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 109236614 and ends at 109270514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C6orf183   21562
Cards
Entrez_Gene (NCBI)C6orf183  100996634  chromosome 6 open reading frame 183
Aliases
GeneCards (Weizmann)C6orf183
Ensembl hg19 (Hinxton)ENSG00000243587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243587 [Gene_View]  ENSG00000243587 [Sequence]  chr6:109236614-109270514 [Contig_View]  C6orf183 [Vega]
ICGC DataPortalENSG00000243587
TCGA cBioPortalC6orf183
AceView (NCBI)C6orf183
Genatlas (Paris)C6orf183
WikiGenes100996634
SOURCE (Princeton)C6orf183
Genetics Home Reference (NIH)C6orf183
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf183  -     chr6:109236614-109270514 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf183  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblC6orf183 - 6q21 [CytoView hg19]  C6orf183 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIC6orf183 [Mapview hg19]  C6orf183 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094715
RefSeq transcript (Entrez)NM_001277339 NM_173671
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf183
Alternative Splicing GalleryENSG00000243587
Gene ExpressionC6orf183 [ NCBI-GEO ]   C6orf183 [ EBI - ARRAY_EXPRESS ]   C6orf183 [ SEEK ]   C6orf183 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf183 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996634
GTEX Portal (Tissue expression)C6orf183
Human Protein AtlasENSG00000243587-C6orf183 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T699   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T699  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T699
Splice isoforms : SwissVarQ5T699
PhosPhoSitePlusQ5T699
Domains : Interpro (EBI)DUF4549   
Domain families : Pfam (Sanger)DUF4549 (PF15082)   
Domain families : Pfam (NCBI)pfam15082   
Conserved Domain (NCBI)C6orf183
DMDM Disease mutations100996634
Blocks (Seattle)C6orf183
SuperfamilyQ5T699
Human Protein Atlas [tissue]ENSG00000243587-C6orf183 [tissue]
Peptide AtlasQ5T699
Protein Interaction databases
DIP (DOE-UCLA)Q5T699
IntAct (EBI)Q5T699
FunCoupENSG00000243587
BioGRIDC6orf183
STRING (EMBL)C6orf183
ZODIACC6orf183
Ontologies - Pathways
QuickGOQ5T699
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf183
Atlas of Cancer Signalling NetworkC6orf183
Wikipedia pathwaysC6orf183
Orthology - Evolution
OrthoDB100996634
GeneTree (enSembl)ENSG00000243587
Phylogenetic Trees/Animal Genes : TreeFamC6orf183
HOVERGENQ5T699
HOGENOMQ5T699
Homologs : HomoloGeneC6orf183
Homology/Alignments : Family Browser (UCSC)C6orf183
Gene fusions - Rearrangements
Fusion : QuiverC6orf183
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf183 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf183
dbVarC6orf183
ClinVarC6orf183
1000_GenomesC6orf183 
Exome Variant ServerC6orf183
ExAC (Exome Aggregation Consortium)ENSG00000243587
GNOMAD BrowserENSG00000243587
Varsome BrowserC6orf183
Genetic variants : HAPMAP100996634
Genomic Variants (DGV)C6orf183 [DGVbeta]
DECIPHERC6orf183 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf183 
Mutations
ICGC Data PortalC6orf183 
TCGA Data PortalC6orf183 
Broad Tumor PortalC6orf183
OASIS PortalC6orf183 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf183  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf183
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf183
DgiDB (Drug Gene Interaction Database)C6orf183
DoCM (Curated mutations)C6orf183 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf183 (select a term)
intoGenC6orf183
Cancer3DC6orf183(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf183
MedgenC6orf183
Genetic Testing Registry C6orf183
NextProtQ5T699 [Medical]
TSGene100996634
GENETestsC6orf183
Target ValidationC6orf183
Huge Navigator C6orf183 [HugePedia]
snp3D : Map Gene to Disease100996634
BioCentury BCIQC6orf183
ClinGenC6orf183
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996634
Clinical trialC6orf183
Miscellaneous
canSAR (ICR)C6orf183 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf183
EVEXC6orf183
GoPubMedC6orf183
iHOPC6orf183
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:37 CEST 2018

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