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C6orf201 (chromosome 6 open reading frame 201)

Identity

Alias_symbol (synonym)dJ1013A10.5
Other alias
HGNC (Hugo) C6orf201
LocusID (NCBI) 404220
Atlas_Id 61242
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 4079206 and ends at 4130765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf201 (6p25.2) / C6orf201 (6p25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf201   21620
Cards
Entrez_Gene (NCBI)C6orf201  404220  chromosome 6 open reading frame 201
AliasesdJ1013A10.5
GeneCards (Weizmann)C6orf201
Ensembl hg19 (Hinxton)ENSG00000185689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185689 [Gene_View]  ENSG00000185689 [Sequence]  chr6:4079206-4130765 [Contig_View]  C6orf201 [Vega]
ICGC DataPortalENSG00000185689
TCGA cBioPortalC6orf201
AceView (NCBI)C6orf201
Genatlas (Paris)C6orf201
WikiGenes404220
SOURCE (Princeton)C6orf201
Genetics Home Reference (NIH)C6orf201
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf201  -     chr6:4079206-4130765 +  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf201  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblC6orf201 - 6p25.2 [CytoView hg19]  C6orf201 - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBIC6orf201 [Mapview hg19]  C6orf201 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF429972 AK124114 AK301893 BC047663 BC066986
RefSeq transcript (Entrez)NM_001085401 NM_206834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf201
Cluster EST : UnigeneHs.742216 [ NCBI ]
CGAP (NCI)Hs.742216
Alternative Splicing GalleryENSG00000185689
Gene ExpressionC6orf201 [ NCBI-GEO ]   C6orf201 [ EBI - ARRAY_EXPRESS ]   C6orf201 [ SEEK ]   C6orf201 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf201 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404220
GTEX Portal (Tissue expression)C6orf201
Human Protein AtlasENSG00000185689-C6orf201 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4U5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4U5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4U5
Splice isoforms : SwissVarQ7Z4U5
PhosPhoSitePlusQ7Z4U5
Domains : Interpro (EBI)DUF4523   
Domain families : Pfam (Sanger)DUF4523 (PF15023)   
Domain families : Pfam (NCBI)pfam15023   
Conserved Domain (NCBI)C6orf201
DMDM Disease mutations404220
Blocks (Seattle)C6orf201
SuperfamilyQ7Z4U5
Human Protein Atlas [tissue]ENSG00000185689-C6orf201 [tissue]
Peptide AtlasQ7Z4U5
HPRD12872
IPIIPI00477126   IPI01013674   IPI00748045   IPI00946303   IPI00945020   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4U5
IntAct (EBI)Q7Z4U5
FunCoupENSG00000185689
BioGRIDC6orf201
STRING (EMBL)C6orf201
ZODIACC6orf201
Ontologies - Pathways
QuickGOQ7Z4U5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf201
Atlas of Cancer Signalling NetworkC6orf201
Wikipedia pathwaysC6orf201
Orthology - Evolution
OrthoDB404220
GeneTree (enSembl)ENSG00000185689
Phylogenetic Trees/Animal Genes : TreeFamC6orf201
HOVERGENQ7Z4U5
HOGENOMQ7Z4U5
Homologs : HomoloGeneC6orf201
Homology/Alignments : Family Browser (UCSC)C6orf201
Gene fusions - Rearrangements
Fusion : QuiverC6orf201
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf201 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf201
dbVarC6orf201
ClinVarC6orf201
1000_GenomesC6orf201 
Exome Variant ServerC6orf201
ExAC (Exome Aggregation Consortium)ENSG00000185689
GNOMAD BrowserENSG00000185689
Varsome BrowserC6orf201
Genetic variants : HAPMAP404220
Genomic Variants (DGV)C6orf201 [DGVbeta]
DECIPHERC6orf201 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf201 
Mutations
ICGC Data PortalC6orf201 
TCGA Data PortalC6orf201 
Broad Tumor PortalC6orf201
OASIS PortalC6orf201 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf201  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf201
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf201
DgiDB (Drug Gene Interaction Database)C6orf201
DoCM (Curated mutations)C6orf201 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf201 (select a term)
intoGenC6orf201
Cancer3DC6orf201(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf201
MedgenC6orf201
Genetic Testing Registry C6orf201
NextProtQ7Z4U5 [Medical]
TSGene404220
GENETestsC6orf201
Target ValidationC6orf201
Huge Navigator C6orf201 [HugePedia]
snp3D : Map Gene to Disease404220
BioCentury BCIQC6orf201
ClinGenC6orf201
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404220
Chemical/Pharm GKB GenePA134906041
Clinical trialC6orf201
Miscellaneous
canSAR (ICR)C6orf201 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf201
EVEXC6orf201
GoPubMedC6orf201
iHOPC6orf201
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:38 CEST 2018

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