Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C6orf203 (chromosome 6 open reading frame 203)

Identity

Alias_symbol (synonym)HSPC230
PRED31
Other alias
HGNC (Hugo) C6orf203
LocusID (NCBI) 51250
Atlas_Id 61243
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 107028172 and ends at 107051586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf203 (6q21) / BEND3 (6q21)PTPRK (6q22.33) / C6orf203 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q22) PTPRK/C6orf203


External links

Nomenclature
HGNC (Hugo)C6orf203   17971
Cards
Entrez_Gene (NCBI)C6orf203  51250  chromosome 6 open reading frame 203
AliasesHSPC230; PRED31
GeneCards (Weizmann)C6orf203
Ensembl hg19 (Hinxton)ENSG00000130349 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130349 [Gene_View]  ENSG00000130349 [Sequence]  chr6:107028172-107051586 [Contig_View]  C6orf203 [Vega]
ICGC DataPortalENSG00000130349
TCGA cBioPortalC6orf203
AceView (NCBI)C6orf203
Genatlas (Paris)C6orf203
WikiGenes51250
SOURCE (Princeton)C6orf203
Genetics Home Reference (NIH)C6orf203
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf203  -     chr6:107028172-107051586 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf203  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblC6orf203 - 6q21 [CytoView hg19]  C6orf203 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIC6orf203 [Mapview hg19]  C6orf203 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151064 AI193526 AI693246 AK091564 BC010899
RefSeq transcript (Entrez)NM_001142468 NM_001142470 NM_016487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf203
Cluster EST : UnigeneHs.689004 [ NCBI ]
CGAP (NCI)Hs.689004
Alternative Splicing GalleryENSG00000130349
Gene ExpressionC6orf203 [ NCBI-GEO ]   C6orf203 [ EBI - ARRAY_EXPRESS ]   C6orf203 [ SEEK ]   C6orf203 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf203 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51250
GTEX Portal (Tissue expression)C6orf203
Human Protein AtlasENSG00000130349-C6orf203 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0P8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0P8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0P8
Splice isoforms : SwissVarQ9P0P8
PhosPhoSitePlusQ9P0P8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf203
DMDM Disease mutations51250
Blocks (Seattle)C6orf203
SuperfamilyQ9P0P8
Human Protein Atlas [tissue]ENSG00000130349-C6orf203 [tissue]
Peptide AtlasQ9P0P8
HPRD12873
IPIIPI00747200   IPI00915263   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0P8
IntAct (EBI)Q9P0P8
FunCoupENSG00000130349
BioGRIDC6orf203
STRING (EMBL)C6orf203
ZODIACC6orf203
Ontologies - Pathways
QuickGOQ9P0P8
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC6orf203
Atlas of Cancer Signalling NetworkC6orf203
Wikipedia pathwaysC6orf203
Orthology - Evolution
OrthoDB51250
GeneTree (enSembl)ENSG00000130349
Phylogenetic Trees/Animal Genes : TreeFamC6orf203
HOVERGENQ9P0P8
HOGENOMQ9P0P8
Homologs : HomoloGeneC6orf203
Homology/Alignments : Family Browser (UCSC)C6orf203
Gene fusions - Rearrangements
Fusion : QuiverC6orf203
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf203 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf203
dbVarC6orf203
ClinVarC6orf203
1000_GenomesC6orf203 
Exome Variant ServerC6orf203
ExAC (Exome Aggregation Consortium)ENSG00000130349
GNOMAD BrowserENSG00000130349
Varsome BrowserC6orf203
Genetic variants : HAPMAP51250
Genomic Variants (DGV)C6orf203 [DGVbeta]
DECIPHERC6orf203 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf203 
Mutations
ICGC Data PortalC6orf203 
TCGA Data PortalC6orf203 
Broad Tumor PortalC6orf203
OASIS PortalC6orf203 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf203  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf203
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C6orf203
DgiDB (Drug Gene Interaction Database)C6orf203
DoCM (Curated mutations)C6orf203 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf203 (select a term)
intoGenC6orf203
Cancer3DC6orf203(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf203
MedgenC6orf203
Genetic Testing Registry C6orf203
NextProtQ9P0P8 [Medical]
TSGene51250
GENETestsC6orf203
Target ValidationC6orf203
Huge Navigator C6orf203 [HugePedia]
snp3D : Map Gene to Disease51250
BioCentury BCIQC6orf203
ClinGenC6orf203
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51250
Chemical/Pharm GKB GenePA134898244
Clinical trialC6orf203
Miscellaneous
canSAR (ICR)C6orf203 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf203
EVEXC6orf203
GoPubMedC6orf203
iHOPC6orf203
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:38 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.