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C6orf222 (chromosome 6 open reading frame 222)

Identity

Alias_symbol (synonym)DKFZp779B1540
Other alias-
HGNC (Hugo) C6orf222
LocusID (NCBI) 389384
Atlas_Id 61244
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 36315758 and ends at 36336885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf222   33769
Cards
Entrez_Gene (NCBI)C6orf222  389384  chromosome 6 open reading frame 222
Aliases
GeneCards (Weizmann)C6orf222
Ensembl hg19 (Hinxton)ENSG00000189325 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189325 [Gene_View]  ENSG00000189325 [Sequence]  chr6:36315758-36336885 [Contig_View]  C6orf222 [Vega]
ICGC DataPortalENSG00000189325
TCGA cBioPortalC6orf222
AceView (NCBI)C6orf222
Genatlas (Paris)C6orf222
WikiGenes389384
SOURCE (Princeton)C6orf222
Genetics Home Reference (NIH)C6orf222
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf222  -     chr6:36315758-36336885 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf222  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblC6orf222 - 6p21.31 [CytoView hg19]  C6orf222 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIC6orf222 [Mapview hg19]  C6orf222 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140873 BX648558
RefSeq transcript (Entrez)NM_001010903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf222
Cluster EST : UnigeneHs.162104 [ NCBI ]
CGAP (NCI)Hs.162104
Alternative Splicing GalleryENSG00000189325
Gene ExpressionC6orf222 [ NCBI-GEO ]   C6orf222 [ EBI - ARRAY_EXPRESS ]   C6orf222 [ SEEK ]   C6orf222 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389384
GTEX Portal (Tissue expression)C6orf222
Human Protein AtlasENSG00000189325-C6orf222 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C671   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C671  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C671
Splice isoforms : SwissVarP0C671
PhosPhoSitePlusP0C671
Domains : Interpro (EBI)C6orf222   
Domain families : Pfam (Sanger)CF222 (PF15661)   
Domain families : Pfam (NCBI)pfam15661   
Conserved Domain (NCBI)C6orf222
DMDM Disease mutations389384
Blocks (Seattle)C6orf222
SuperfamilyP0C671
Human Protein Atlas [tissue]ENSG00000189325-C6orf222 [tissue]
Peptide AtlasP0C671
HPRD16824
IPIIPI00398117   
Protein Interaction databases
DIP (DOE-UCLA)P0C671
IntAct (EBI)P0C671
FunCoupENSG00000189325
BioGRIDC6orf222
STRING (EMBL)C6orf222
ZODIACC6orf222
Ontologies - Pathways
QuickGOP0C671
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf222
Atlas of Cancer Signalling NetworkC6orf222
Wikipedia pathwaysC6orf222
Orthology - Evolution
OrthoDB389384
GeneTree (enSembl)ENSG00000189325
Phylogenetic Trees/Animal Genes : TreeFamC6orf222
HOVERGENP0C671
HOGENOMP0C671
Homologs : HomoloGeneC6orf222
Homology/Alignments : Family Browser (UCSC)C6orf222
Gene fusions - Rearrangements
Fusion : QuiverC6orf222
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf222 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf222
dbVarC6orf222
ClinVarC6orf222
1000_GenomesC6orf222 
Exome Variant ServerC6orf222
ExAC (Exome Aggregation Consortium)ENSG00000189325
GNOMAD BrowserENSG00000189325
Varsome BrowserC6orf222
Genetic variants : HAPMAP389384
Genomic Variants (DGV)C6orf222 [DGVbeta]
DECIPHERC6orf222 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf222 
Mutations
ICGC Data PortalC6orf222 
TCGA Data PortalC6orf222 
Broad Tumor PortalC6orf222
OASIS PortalC6orf222 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf222  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf222
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf222
DgiDB (Drug Gene Interaction Database)C6orf222
DoCM (Curated mutations)C6orf222 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf222 (select a term)
intoGenC6orf222
Cancer3DC6orf222(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf222
MedgenC6orf222
Genetic Testing Registry C6orf222
NextProtP0C671 [Medical]
TSGene389384
GENETestsC6orf222
Target ValidationC6orf222
Huge Navigator C6orf222 [HugePedia]
snp3D : Map Gene to Disease389384
BioCentury BCIQC6orf222
ClinGenC6orf222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389384
Chemical/Pharm GKB GenePA162380399
Clinical trialC6orf222
Miscellaneous
canSAR (ICR)C6orf222 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf222
EVEXC6orf222
GoPubMedC6orf222
iHOPC6orf222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:38 CEST 2018

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