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C6orf223 (chromosome 6 open reading frame 223)

Identity

Alias_symbol (synonym)MGC45491
Other alias-
HGNC (Hugo) C6orf223
LocusID (NCBI) 221416
Atlas_Id 61245
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 44000600 and ends at 44007615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf223   28692
Cards
Entrez_Gene (NCBI)C6orf223  221416  chromosome 6 open reading frame 223
Aliases
GeneCards (Weizmann)C6orf223
Ensembl hg19 (Hinxton)ENSG00000181577 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181577 [Gene_View]  ENSG00000181577 [Sequence]  chr6:44000600-44007615 [Contig_View]  C6orf223 [Vega]
ICGC DataPortalENSG00000181577
TCGA cBioPortalC6orf223
AceView (NCBI)C6orf223
Genatlas (Paris)C6orf223
WikiGenes221416
SOURCE (Princeton)C6orf223
Genetics Home Reference (NIH)C6orf223
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf223  -     chr6:44000600-44007615 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf223  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblC6orf223 - 6p21.1 [CytoView hg19]  C6orf223 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIC6orf223 [Mapview hg19]  C6orf223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL555526 AW136542 AW297349 BC029071 BC032706
RefSeq transcript (Entrez)NM_001171992 NM_001324369 NM_153246
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf223
Cluster EST : UnigeneHs.733478 [ NCBI ]
CGAP (NCI)Hs.733478
Alternative Splicing GalleryENSG00000181577
Gene ExpressionC6orf223 [ NCBI-GEO ]   C6orf223 [ EBI - ARRAY_EXPRESS ]   C6orf223 [ SEEK ]   C6orf223 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221416
GTEX Portal (Tissue expression)C6orf223
Human Protein AtlasENSG00000181577-C6orf223 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N319   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N319  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N319
Splice isoforms : SwissVarQ8N319
PhosPhoSitePlusQ8N319
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf223
DMDM Disease mutations221416
Blocks (Seattle)C6orf223
SuperfamilyQ8N319
Human Protein Atlas [tissue]ENSG00000181577-C6orf223 [tissue]
Peptide AtlasQ8N319
HPRD14640
IPIIPI00166465   IPI00955479   
Protein Interaction databases
DIP (DOE-UCLA)Q8N319
IntAct (EBI)Q8N319
FunCoupENSG00000181577
BioGRIDC6orf223
STRING (EMBL)C6orf223
ZODIACC6orf223
Ontologies - Pathways
QuickGOQ8N319
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf223
Atlas of Cancer Signalling NetworkC6orf223
Wikipedia pathwaysC6orf223
Orthology - Evolution
OrthoDB221416
GeneTree (enSembl)ENSG00000181577
Phylogenetic Trees/Animal Genes : TreeFamC6orf223
HOVERGENQ8N319
HOGENOMQ8N319
Homologs : HomoloGeneC6orf223
Homology/Alignments : Family Browser (UCSC)C6orf223
Gene fusions - Rearrangements
Fusion : QuiverC6orf223
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf223
dbVarC6orf223
ClinVarC6orf223
1000_GenomesC6orf223 
Exome Variant ServerC6orf223
ExAC (Exome Aggregation Consortium)ENSG00000181577
GNOMAD BrowserENSG00000181577
Varsome BrowserC6orf223
Genetic variants : HAPMAP221416
Genomic Variants (DGV)C6orf223 [DGVbeta]
DECIPHERC6orf223 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf223 
Mutations
ICGC Data PortalC6orf223 
TCGA Data PortalC6orf223 
Broad Tumor PortalC6orf223
OASIS PortalC6orf223 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf223  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf223
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf223
DgiDB (Drug Gene Interaction Database)C6orf223
DoCM (Curated mutations)C6orf223 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf223 (select a term)
intoGenC6orf223
Cancer3DC6orf223(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf223
MedgenC6orf223
Genetic Testing Registry C6orf223
NextProtQ8N319 [Medical]
TSGene221416
GENETestsC6orf223
Target ValidationC6orf223
Huge Navigator C6orf223 [HugePedia]
snp3D : Map Gene to Disease221416
BioCentury BCIQC6orf223
ClinGenC6orf223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221416
Chemical/Pharm GKB GenePA162380428
Clinical trialC6orf223
Miscellaneous
canSAR (ICR)C6orf223 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf223
EVEXC6orf223
GoPubMedC6orf223
iHOPC6orf223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:38 CEST 2018

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