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C6orf226 (chromosome 6 open reading frame 226)

Identity

Alias_symbol (synonym)LOC441150
Other alias-
HGNC (Hugo) C6orf226
LocusID (NCBI) 441150
Atlas_Id 61246
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42890265 and ends at 42890816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf226   34431
Cards
Entrez_Gene (NCBI)C6orf226  441150  chromosome 6 open reading frame 226
Aliases
GeneCards (Weizmann)C6orf226
Ensembl hg19 (Hinxton)ENSG00000221821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221821 [Gene_View]  ENSG00000221821 [Sequence]  chr6:42890265-42890816 [Contig_View]  C6orf226 [Vega]
ICGC DataPortalENSG00000221821
TCGA cBioPortalC6orf226
AceView (NCBI)C6orf226
Genatlas (Paris)C6orf226
WikiGenes441150
SOURCE (Princeton)C6orf226
Genetics Home Reference (NIH)C6orf226
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf226  -     chr6:42890265-42890816 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf226  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblC6orf226 - 6p21.1 [CytoView hg19]  C6orf226 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIC6orf226 [Mapview hg19]  C6orf226 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC051007 BC060325 BC073804 BC094854 HQ257974
RefSeq transcript (Entrez)NM_001008739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf226
Cluster EST : UnigeneHs.571098 [ NCBI ]
CGAP (NCI)Hs.571098
Alternative Splicing GalleryENSG00000221821
Gene ExpressionC6orf226 [ NCBI-GEO ]   C6orf226 [ EBI - ARRAY_EXPRESS ]   C6orf226 [ SEEK ]   C6orf226 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf226 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441150
GTEX Portal (Tissue expression)C6orf226
Human Protein AtlasENSG00000221821-C6orf226 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5I0X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5I0X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5I0X4
Splice isoforms : SwissVarQ5I0X4
PhosPhoSitePlusQ5I0X4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf226
DMDM Disease mutations441150
Blocks (Seattle)C6orf226
SuperfamilyQ5I0X4
Human Protein Atlas [tissue]ENSG00000221821-C6orf226 [tissue]
Peptide AtlasQ5I0X4
HPRD17403
IPIIPI00550846   
Protein Interaction databases
DIP (DOE-UCLA)Q5I0X4
IntAct (EBI)Q5I0X4
FunCoupENSG00000221821
BioGRIDC6orf226
STRING (EMBL)C6orf226
ZODIACC6orf226
Ontologies - Pathways
QuickGOQ5I0X4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC6orf226
Atlas of Cancer Signalling NetworkC6orf226
Wikipedia pathwaysC6orf226
Orthology - Evolution
OrthoDB441150
GeneTree (enSembl)ENSG00000221821
Phylogenetic Trees/Animal Genes : TreeFamC6orf226
HOVERGENQ5I0X4
HOGENOMQ5I0X4
Homologs : HomoloGeneC6orf226
Homology/Alignments : Family Browser (UCSC)C6orf226
Gene fusions - Rearrangements
Fusion : QuiverC6orf226
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf226 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf226
dbVarC6orf226
ClinVarC6orf226
1000_GenomesC6orf226 
Exome Variant ServerC6orf226
ExAC (Exome Aggregation Consortium)ENSG00000221821
GNOMAD BrowserENSG00000221821
Varsome BrowserC6orf226
Genetic variants : HAPMAP441150
Genomic Variants (DGV)C6orf226 [DGVbeta]
DECIPHERC6orf226 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf226 
Mutations
ICGC Data PortalC6orf226 
TCGA Data PortalC6orf226 
Broad Tumor PortalC6orf226
OASIS PortalC6orf226 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf226  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf226
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf226
DgiDB (Drug Gene Interaction Database)C6orf226
DoCM (Curated mutations)C6orf226 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf226 (select a term)
intoGenC6orf226
Cancer3DC6orf226(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf226
MedgenC6orf226
Genetic Testing Registry C6orf226
NextProtQ5I0X4 [Medical]
TSGene441150
GENETestsC6orf226
Target ValidationC6orf226
Huge Navigator C6orf226 [HugePedia]
snp3D : Map Gene to Disease441150
BioCentury BCIQC6orf226
ClinGenC6orf226
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441150
Chemical/Pharm GKB GenePA164717364
Clinical trialC6orf226
Miscellaneous
canSAR (ICR)C6orf226 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf226
EVEXC6orf226
GoPubMedC6orf226
iHOPC6orf226
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:39 CEST 2018

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