Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C6orf229 (chromosome 6 open reading frame 229)

Identity

Other alias-
HGNC (Hugo) C6orf229
LocusID (NCBI) 101928603
Atlas_Id 61247
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 24797321 and ends at 24798896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf229   49394
Cards
Entrez_Gene (NCBI)C6orf229  101928603  chromosome 6 open reading frame 229
Aliases
GeneCards (Weizmann)C6orf229
Ensembl hg19 (Hinxton)ENSG00000260286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260286 [Gene_View]  ENSG00000260286 [Sequence]  chr6:24797321-24798896 [Contig_View]  C6orf229 [Vega]
ICGC DataPortalENSG00000260286
TCGA cBioPortalC6orf229
AceView (NCBI)C6orf229
Genatlas (Paris)C6orf229
WikiGenes101928603
SOURCE (Princeton)C6orf229
Genetics Home Reference (NIH)C6orf229
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf229  -     chr6:24797321-24798896 -  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf229  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblC6orf229 - 6p22.3 [CytoView hg19]  C6orf229 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIC6orf229 [Mapview hg19]  C6orf229 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW015999
RefSeq transcript (Entrez)NM_001282492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf229
Cluster EST : UnigeneHs.635133 [ NCBI ]
CGAP (NCI)Hs.635133
Alternative Splicing GalleryENSG00000260286
Gene ExpressionC6orf229 [ NCBI-GEO ]   C6orf229 [ EBI - ARRAY_EXPRESS ]   C6orf229 [ SEEK ]   C6orf229 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf229 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928603
GTEX Portal (Tissue expression)C6orf229
Human Protein AtlasENSG00000260286-C6orf229 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BNL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BNL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BNL8
Splice isoforms : SwissVarH3BNL8
PhosPhoSitePlusH3BNL8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf229
DMDM Disease mutations101928603
Blocks (Seattle)C6orf229
SuperfamilyH3BNL8
Human Protein Atlas [tissue]ENSG00000260286-C6orf229 [tissue]
Peptide AtlasH3BNL8
Protein Interaction databases
DIP (DOE-UCLA)H3BNL8
IntAct (EBI)H3BNL8
FunCoupENSG00000260286
BioGRIDC6orf229
STRING (EMBL)C6orf229
ZODIACC6orf229
Ontologies - Pathways
QuickGOH3BNL8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf229
Atlas of Cancer Signalling NetworkC6orf229
Wikipedia pathwaysC6orf229
Orthology - Evolution
OrthoDB101928603
GeneTree (enSembl)ENSG00000260286
Phylogenetic Trees/Animal Genes : TreeFamC6orf229
HOVERGENH3BNL8
HOGENOMH3BNL8
Homologs : HomoloGeneC6orf229
Homology/Alignments : Family Browser (UCSC)C6orf229
Gene fusions - Rearrangements
Fusion : QuiverC6orf229
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf229 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf229
dbVarC6orf229
ClinVarC6orf229
1000_GenomesC6orf229 
Exome Variant ServerC6orf229
ExAC (Exome Aggregation Consortium)ENSG00000260286
GNOMAD BrowserENSG00000260286
Varsome BrowserC6orf229
Genetic variants : HAPMAP101928603
Genomic Variants (DGV)C6orf229 [DGVbeta]
DECIPHERC6orf229 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf229 
Mutations
ICGC Data PortalC6orf229 
TCGA Data PortalC6orf229 
Broad Tumor PortalC6orf229
OASIS PortalC6orf229 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC6orf229
BioMutasearch C6orf229
DgiDB (Drug Gene Interaction Database)C6orf229
DoCM (Curated mutations)C6orf229 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf229 (select a term)
intoGenC6orf229
Cancer3DC6orf229(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf229
MedgenC6orf229
Genetic Testing Registry C6orf229
NextProtH3BNL8 [Medical]
TSGene101928603
GENETestsC6orf229
Target ValidationC6orf229
Huge Navigator C6orf229 [HugePedia]
snp3D : Map Gene to Disease101928603
BioCentury BCIQC6orf229
ClinGenC6orf229
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928603
Clinical trialC6orf229
Miscellaneous
canSAR (ICR)C6orf229 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf229
EVEXC6orf229
GoPubMedC6orf229
iHOPC6orf229
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:39 CEST 2018

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