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C6orf25 (chromosome 6 open reading frame 25)

Identity

Alias_symbol (synonym)G6b
NG31
Other alias
HGNC (Hugo) C6orf25
LocusID (NCBI) 80739
Atlas_Id 61248
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31691121 and ends at 31694485 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf25   13937
Cards
Entrez_Gene (NCBI)C6orf25  80739  chromosome 6 open reading frame 25
AliasesG6b; NG31
GeneCards (Weizmann)C6orf25
Ensembl hg19 (Hinxton)ENSG00000204420 [Gene_View]  chr6:31691121-31694485 [Contig_View]  C6orf25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204420 [Gene_View]  chr6:31691121-31694485 [Contig_View]  C6orf25 [Vega]
ICGC DataPortalENSG00000204420
TCGA cBioPortalC6orf25
AceView (NCBI)C6orf25
Genatlas (Paris)C6orf25
WikiGenes80739
SOURCE (Princeton)C6orf25
Genetics Home Reference (NIH)C6orf25
Genomic and cartography
GoldenPath hg19 (UCSC)C6orf25  -     chr6:31691121-31694485 +  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C6orf25  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblC6orf25 - 6p21.33 [CytoView hg19]  C6orf25 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIC6orf25 [Mapview hg19]  C6orf25 [Mapview hg38]
OMIM606520   
Gene and transcription
Genbank (Entrez)AJ292259 AJ292260 AJ292261 AJ292262 AJ292263
RefSeq transcript (Entrez)NM_025260 NM_138272 NM_138273 NM_138274 NM_138275 NM_138276 NM_138277
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_029044 NT_007592 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)C6orf25
Cluster EST : UnigeneHs.247879 [ NCBI ]
CGAP (NCI)Hs.247879
Alternative Splicing GalleryENSG00000204420
Gene ExpressionC6orf25 [ NCBI-GEO ]   C6orf25 [ EBI - ARRAY_EXPRESS ]   C6orf25 [ SEEK ]   C6orf25 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80739
GTEX Portal (Tissue expression)C6orf25
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95866   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95866  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95866
Splice isoforms : SwissVarO95866
PhosPhoSitePlusO95866
Domains : Interpro (EBI)G6B    Ig_sub   
Domain families : Pfam (Sanger)G6B (PF15096)   
Domain families : Pfam (NCBI)pfam15096   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)C6orf25
DMDM Disease mutations80739
Blocks (Seattle)C6orf25
SuperfamilyO95866
Human Protein AtlasENSG00000204420
Peptide AtlasO95866
HPRD09405
IPIIPI00019314   IPI00216583   IPI00059303   IPI00059301   IPI00059300   IPI00059299   IPI00107432   IPI00892515   IPI00893457   IPI00893049   IPI00922486   IPI00946654   
Protein Interaction databases
DIP (DOE-UCLA)O95866
IntAct (EBI)O95866
FunCoupENSG00000204420
BioGRIDC6orf25
STRING (EMBL)C6orf25
ZODIACC6orf25
Ontologies - Pathways
QuickGOO95866
Ontology : AmiGOendoplasmic reticulum  Golgi apparatus  plasma membrane  integrin-mediated signaling pathway  blood coagulation  heparin binding  integral component of membrane  platelet formation  megakaryocyte development  
Ontology : EGO-EBIendoplasmic reticulum  Golgi apparatus  plasma membrane  integrin-mediated signaling pathway  blood coagulation  heparin binding  integral component of membrane  platelet formation  megakaryocyte development  
NDEx NetworkC6orf25
Atlas of Cancer Signalling NetworkC6orf25
Wikipedia pathwaysC6orf25
Orthology - Evolution
OrthoDB80739
GeneTree (enSembl)ENSG00000204420
Phylogenetic Trees/Animal Genes : TreeFamC6orf25
HOVERGENO95866
HOGENOMO95866
Homologs : HomoloGeneC6orf25
Homology/Alignments : Family Browser (UCSC)C6orf25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf25
dbVarC6orf25
ClinVarC6orf25
1000_GenomesC6orf25 
Exome Variant ServerC6orf25
ExAC (Exome Aggregation Consortium)C6orf25 (select the gene name)
Genetic variants : HAPMAP80739
Genomic Variants (DGV)C6orf25 [DGVbeta]
DECIPHER (Syndromes)6:31691121-31694485  ENSG00000204420
CONAN: Copy Number AnalysisC6orf25 
Mutations
ICGC Data PortalC6orf25 
TCGA Data PortalC6orf25 
Broad Tumor PortalC6orf25
OASIS PortalC6orf25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf25
DgiDB (Drug Gene Interaction Database)C6orf25
DoCM (Curated mutations)C6orf25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf25 (select a term)
intoGenC6orf25
Cancer3DC6orf25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606520   
Orphanet
MedgenC6orf25
Genetic Testing Registry C6orf25
NextProtO95866 [Medical]
TSGene80739
GENETestsC6orf25
Huge Navigator C6orf25 [HugePedia]
snp3D : Map Gene to Disease80739
BioCentury BCIQC6orf25
ClinGenC6orf25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80739
Chemical/Pharm GKB GenePA25926
Clinical trialC6orf25
Miscellaneous
canSAR (ICR)C6orf25 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf25
EVEXC6orf25
GoPubMedC6orf25
iHOPC6orf25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:33 CET 2017

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