Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C6orf47 (chromosome 6 open reading frame 47)

Identity

Alias_symbol (synonym)D6S53E
G4
Other aliasNG34
HGNC (Hugo) C6orf47
LocusID (NCBI) 57827
Atlas_Id 61249
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31626075 and ends at 31628549 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C6orf47 (6p21.33) / BAG6 (6p21.33)C6orf47 (6p21.33) / EPHX1 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf47   19076
Cards
Entrez_Gene (NCBI)C6orf47  57827  chromosome 6 open reading frame 47
AliasesD6S53E; G4; NG34
GeneCards (Weizmann)C6orf47
Ensembl hg19 (Hinxton)ENSG00000204439 [Gene_View]  chr6:31626075-31628549 [Contig_View]  C6orf47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204439 [Gene_View]  chr6:31626075-31628549 [Contig_View]  C6orf47 [Vega]
ICGC DataPortalENSG00000204439
TCGA cBioPortalC6orf47
AceView (NCBI)C6orf47
Genatlas (Paris)C6orf47
WikiGenes57827
SOURCE (Princeton)C6orf47
Genetics Home Reference (NIH)C6orf47
Genomic and cartography
GoldenPath hg19 (UCSC)C6orf47  -     chr6:31626075-31628549 -  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C6orf47  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblC6orf47 - 6p21.33 [CytoView hg19]  C6orf47 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIC6orf47 [Mapview hg19]  C6orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ245433 AK315349 BC012950 BC063584
RefSeq transcript (Entrez)NM_021184
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)C6orf47
Cluster EST : UnigeneHs.247323 [ NCBI ]
CGAP (NCI)Hs.247323
Alternative Splicing GalleryENSG00000204439
Gene ExpressionC6orf47 [ NCBI-GEO ]   C6orf47 [ EBI - ARRAY_EXPRESS ]   C6orf47 [ SEEK ]   C6orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57827
GTEX Portal (Tissue expression)C6orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95873   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95873  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95873
Splice isoforms : SwissVarO95873
PhosPhoSitePlusO95873
Domains : Interpro (EBI)DUF4661   
Domain families : Pfam (Sanger)DUF4661 (PF15576)   
Domain families : Pfam (NCBI)pfam15576   
Conserved Domain (NCBI)C6orf47
DMDM Disease mutations57827
Blocks (Seattle)C6orf47
SuperfamilyO95873
Human Protein AtlasENSG00000204439
Peptide AtlasO95873
HPRD12883
IPIIPI00428484   IPI00099521   
Protein Interaction databases
DIP (DOE-UCLA)O95873
IntAct (EBI)O95873
FunCoupENSG00000204439
BioGRIDC6orf47
STRING (EMBL)C6orf47
ZODIACC6orf47
Ontologies - Pathways
QuickGOO95873
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkC6orf47
Atlas of Cancer Signalling NetworkC6orf47
Wikipedia pathwaysC6orf47
Orthology - Evolution
OrthoDB57827
GeneTree (enSembl)ENSG00000204439
Phylogenetic Trees/Animal Genes : TreeFamC6orf47
HOVERGENO95873
HOGENOMO95873
Homologs : HomoloGeneC6orf47
Homology/Alignments : Family Browser (UCSC)C6orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf47
dbVarC6orf47
ClinVarC6orf47
1000_GenomesC6orf47 
Exome Variant ServerC6orf47
ExAC (Exome Aggregation Consortium)C6orf47 (select the gene name)
Genetic variants : HAPMAP57827
Genomic Variants (DGV)C6orf47 [DGVbeta]
DECIPHER (Syndromes)6:31626075-31628549  ENSG00000204439
CONAN: Copy Number AnalysisC6orf47 
Mutations
ICGC Data PortalC6orf47 
TCGA Data PortalC6orf47 
Broad Tumor PortalC6orf47
OASIS PortalC6orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf47
DgiDB (Drug Gene Interaction Database)C6orf47
DoCM (Curated mutations)C6orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf47 (select a term)
intoGenC6orf47
Cancer3DC6orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC6orf47
Genetic Testing Registry C6orf47
NextProtO95873 [Medical]
TSGene57827
GENETestsC6orf47
Huge Navigator C6orf47 [HugePedia]
snp3D : Map Gene to Disease57827
BioCentury BCIQC6orf47
ClinGenC6orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57827
Chemical/Pharm GKB GenePA38785
Clinical trialC6orf47
Miscellaneous
canSAR (ICR)C6orf47 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf47
EVEXC6orf47
GoPubMedC6orf47
iHOPC6orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.