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C6orf52 (chromosome 6 open reading frame 52)

Identity

Other alias-
HGNC (Hugo) C6orf52
LocusID (NCBI) 347744
Atlas_Id 61250
Location 6p24.2  [Link to chromosome band 6p24]
Location_base_pair Starts at 10671418 and ends at 10694606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAST2 (1p34.1) / C6orf52 (6p24.2)RHOJ (14q23.2) / C6orf52 (6p24.2)MAST2 C6orf52
RHOJ C6orf52

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;6)(p34;p24) MAST2/C6orf52
t(6;14)(p24;q23) RHOJ/C6orf52


External links

Nomenclature
HGNC (Hugo)C6orf52   20881
Cards
Entrez_Gene (NCBI)C6orf52  347744  chromosome 6 open reading frame 52
Aliases
GeneCards (Weizmann)C6orf52
Ensembl hg19 (Hinxton)ENSG00000137434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137434 [Gene_View]  ENSG00000137434 [Sequence]  chr6:10671418-10694606 [Contig_View]  C6orf52 [Vega]
ICGC DataPortalENSG00000137434
TCGA cBioPortalC6orf52
AceView (NCBI)C6orf52
Genatlas (Paris)C6orf52
WikiGenes347744
SOURCE (Princeton)C6orf52
Genetics Home Reference (NIH)C6orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf52  -     chr6:10671418-10694606 -  6p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf52  -     6p24.2   [Description]    (hg19-Feb_2009)
EnsemblC6orf52 - 6p24.2 [CytoView hg19]  C6orf52 - 6p24.2 [CytoView hg38]
Mapping of homologs : NCBIC6orf52 [Mapview hg19]  C6orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI376550 AI621292 AI809192 AW183566 AW293245
RefSeq transcript (Entrez)NM_001145020
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf52
Cluster EST : UnigeneHs.61389 [ NCBI ]
CGAP (NCI)Hs.61389
Alternative Splicing GalleryENSG00000137434
Gene ExpressionC6orf52 [ NCBI-GEO ]   C6orf52 [ EBI - ARRAY_EXPRESS ]   C6orf52 [ SEEK ]   C6orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347744
GTEX Portal (Tissue expression)C6orf52
Human Protein AtlasENSG00000137434-C6orf52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4I8
Splice isoforms : SwissVarQ5T4I8
PhosPhoSitePlusQ5T4I8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf52
DMDM Disease mutations347744
Blocks (Seattle)C6orf52
SuperfamilyQ5T4I8
Human Protein Atlas [tissue]ENSG00000137434-C6orf52 [tissue]
Peptide AtlasQ5T4I8
IPIIPI00303236   IPI00640535   IPI00964263   IPI01012726   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4I8
IntAct (EBI)Q5T4I8
FunCoupENSG00000137434
BioGRIDC6orf52
STRING (EMBL)C6orf52
ZODIACC6orf52
Ontologies - Pathways
QuickGOQ5T4I8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf52
Atlas of Cancer Signalling NetworkC6orf52
Wikipedia pathwaysC6orf52
Orthology - Evolution
OrthoDB347744
GeneTree (enSembl)ENSG00000137434
Phylogenetic Trees/Animal Genes : TreeFamC6orf52
HOVERGENQ5T4I8
HOGENOMQ5T4I8
Homologs : HomoloGeneC6orf52
Homology/Alignments : Family Browser (UCSC)C6orf52
Gene fusions - Rearrangements
Fusion PortalMAST2 C6orf52
Fusion PortalRHOJ C6orf52
Fusion : QuiverC6orf52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf52
dbVarC6orf52
ClinVarC6orf52
1000_GenomesC6orf52 
Exome Variant ServerC6orf52
ExAC (Exome Aggregation Consortium)ENSG00000137434
GNOMAD BrowserENSG00000137434
Varsome BrowserC6orf52
Genetic variants : HAPMAP347744
Genomic Variants (DGV)C6orf52 [DGVbeta]
DECIPHERC6orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf52 
Mutations
ICGC Data PortalC6orf52 
TCGA Data PortalC6orf52 
Broad Tumor PortalC6orf52
OASIS PortalC6orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf52
DgiDB (Drug Gene Interaction Database)C6orf52
DoCM (Curated mutations)C6orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf52 (select a term)
intoGenC6orf52
Cancer3DC6orf52(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf52
MedgenC6orf52
Genetic Testing Registry C6orf52
NextProtQ5T4I8 [Medical]
TSGene347744
GENETestsC6orf52
Target ValidationC6orf52
Huge Navigator C6orf52 [HugePedia]
snp3D : Map Gene to Disease347744
BioCentury BCIQC6orf52
ClinGenC6orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347744
Chemical/Pharm GKB GenePA134991266
Clinical trialC6orf52
Miscellaneous
canSAR (ICR)C6orf52 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf52
EVEXC6orf52
GoPubMedC6orf52
iHOPC6orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:39 CEST 2018

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