Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C6orf62 (chromosome 6 open reading frame 62)

Identity

Alias_symbol (synonym)FLJ12619
DKFZP564G182
XTP12
Other aliasNbla00237
dJ30M3.2
HGNC (Hugo) C6orf62
LocusID (NCBI) 81688
Atlas_Id 54179
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 24705090 and ends at 24719403 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C6orf62 (6p22.3) / C6orf62 (6p22.3)C6orf62 (6p22.3) / FAM65B (6p22.3)C6orf62 (6p22.3) / GRHL1 (2p25.1)
C6orf62 (6p22.3) / NEAT1 (11q13.1)KCTD7 (7q11.21) / C6orf62 (6p22.3)RNU5F-1 (1q41) / C6orf62 (6p22.3)
SEC31A (4q21.22) / C6orf62 (6p22.3)ZBTB4 (17p13.1) / C6orf62 (6p22.3)C6orf62 6p22.3 / FAM65B 6p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf62   20998
Cards
Entrez_Gene (NCBI)C6orf62  81688  chromosome 6 open reading frame 62
AliasesNbla00237; XTP12; dJ30M3.2
GeneCards (Weizmann)C6orf62
Ensembl hg19 (Hinxton)ENSG00000112308 [Gene_View]  chr6:24705090-24719403 [Contig_View]  C6orf62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000112308 [Gene_View]  chr6:24705090-24719403 [Contig_View]  C6orf62 [Vega]
ICGC DataPortalENSG00000112308
TCGA cBioPortalC6orf62
AceView (NCBI)C6orf62
Genatlas (Paris)C6orf62
WikiGenes81688
SOURCE (Princeton)C6orf62
Genetics Home Reference (NIH)C6orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C6orf62  -     chr6:24705090-24719403 -  6p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C6orf62  -     6p22.3   [Description]    (hg38-Dec_2013)
EnsemblC6orf62 - 6p22.3 [CytoView hg19]  C6orf62 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIC6orf62 [Mapview hg19]  C6orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075502 AJ420475 AK022681 AK301718 AL136632
RefSeq transcript (Entrez)NM_030939
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)C6orf62
Cluster EST : UnigeneHs.744857 [ NCBI ]
CGAP (NCI)Hs.744857
Alternative Splicing GalleryENSG00000112308
Gene ExpressionC6orf62 [ NCBI-GEO ]   C6orf62 [ EBI - ARRAY_EXPRESS ]   C6orf62 [ SEEK ]   C6orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81688
GTEX Portal (Tissue expression)C6orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU0
Splice isoforms : SwissVarQ9GZU0
PhosPhoSitePlusQ9GZU0
Domains : Interpro (EBI)DUF4566   
Domain families : Pfam (Sanger)DUF4566 (PF15130)   
Domain families : Pfam (NCBI)pfam15130   
Domain structure : Prodom (Prabi Lyon)Uncharacterised_C6orf62 (PD313493)   
Conserved Domain (NCBI)C6orf62
DMDM Disease mutations81688
Blocks (Seattle)C6orf62
SuperfamilyQ9GZU0
Human Protein AtlasENSG00000112308
Peptide AtlasQ9GZU0
HPRD12891
IPIIPI00008855   IPI00552837   IPI01015285   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU0
IntAct (EBI)Q9GZU0
FunCoupENSG00000112308
BioGRIDC6orf62
STRING (EMBL)C6orf62
ZODIACC6orf62
Ontologies - Pathways
QuickGOQ9GZU0
Ontology : AmiGOmolecular_function  intracellular  biological_process  
Ontology : EGO-EBImolecular_function  intracellular  biological_process  
NDEx NetworkC6orf62
Atlas of Cancer Signalling NetworkC6orf62
Wikipedia pathwaysC6orf62
Orthology - Evolution
OrthoDB81688
GeneTree (enSembl)ENSG00000112308
Phylogenetic Trees/Animal Genes : TreeFamC6orf62
HOVERGENQ9GZU0
HOGENOMQ9GZU0
Homologs : HomoloGeneC6orf62
Homology/Alignments : Family Browser (UCSC)C6orf62
Gene fusions - Rearrangements
Fusion : MitelmanC6orf62/FAM65B [6p22.3/6p22.3]  
Fusion : MitelmanSEC31A/C6orf62 [4q21.22/6p22.3]  [t(4;6)(q21;p22)]  
Fusion: TCGAC6orf62 6p22.3 FAM65B 6p22.3 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf62
dbVarC6orf62
ClinVarC6orf62
1000_GenomesC6orf62 
Exome Variant ServerC6orf62
ExAC (Exome Aggregation Consortium)C6orf62 (select the gene name)
Genetic variants : HAPMAP81688
Genomic Variants (DGV)C6orf62 [DGVbeta]
DECIPHER (Syndromes)6:24705090-24719403  ENSG00000112308
CONAN: Copy Number AnalysisC6orf62 
Mutations
ICGC Data PortalC6orf62 
TCGA Data PortalC6orf62 
Broad Tumor PortalC6orf62
OASIS PortalC6orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf62
DgiDB (Drug Gene Interaction Database)C6orf62
DoCM (Curated mutations)C6orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf62 (select a term)
intoGenC6orf62
Cancer3DC6orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC6orf62
Genetic Testing Registry C6orf62
NextProtQ9GZU0 [Medical]
TSGene81688
GENETestsC6orf62
Huge Navigator C6orf62 [HugePedia]
snp3D : Map Gene to Disease81688
BioCentury BCIQC6orf62
ClinGenC6orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81688
Chemical/Pharm GKB GenePA134946342
Clinical trialC6orf62
Miscellaneous
canSAR (ICR)C6orf62 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf62
EVEXC6orf62
GoPubMedC6orf62
iHOPC6orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:19 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.