Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C6orf99 (chromosome 6 open reading frame 99)

Identity

Alias_symbol (synonym)yR211F11.1
Other alias
HGNC (Hugo) C6orf99
LocusID (NCBI) 100130967
Atlas_Id 61255
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158888587 and ends at 158910353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C6orf99   21179
Cards
Entrez_Gene (NCBI)C6orf99  100130967  chromosome 6 open reading frame 99
AliasesyR211F11.1
GeneCards (Weizmann)C6orf99
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:158888587-158910353 [Contig_View]  C6orf99 [Vega]
TCGA cBioPortalC6orf99
AceView (NCBI)C6orf99
Genatlas (Paris)C6orf99
WikiGenes100130967
SOURCE (Princeton)C6orf99
Genetics Home Reference (NIH)C6orf99
Genomic and cartography
GoldenPath hg38 (UCSC)C6orf99  -     chr6:158888587-158910353 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C6orf99  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblC6orf99 - 6q25.3 [CytoView hg19]  C6orf99 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBIC6orf99 [Mapview hg19]  C6orf99 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA913820 AW138390 BF688381 DB080574 DB455167
RefSeq transcript (Entrez)NM_001195032 NM_001302839 NM_001302840 NM_001302841
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C6orf99
Cluster EST : UnigeneHs.739022 [ NCBI ]
CGAP (NCI)Hs.739022
Gene ExpressionC6orf99 [ NCBI-GEO ]   C6orf99 [ EBI - ARRAY_EXPRESS ]   C6orf99 [ SEEK ]   C6orf99 [ MEM ]
Gene Expression Viewer (FireBrowse)C6orf99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130967
GTEX Portal (Tissue expression)C6orf99
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VX62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VX62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VX62
Splice isoforms : SwissVarQ4VX62
PhosPhoSitePlusQ4VX62
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C6orf99
DMDM Disease mutations100130967
Blocks (Seattle)C6orf99
SuperfamilyQ4VX62
Peptide AtlasQ4VX62
IPIIPI00374988   IPI00646893   
Protein Interaction databases
DIP (DOE-UCLA)Q4VX62
IntAct (EBI)Q4VX62
BioGRIDC6orf99
STRING (EMBL)C6orf99
ZODIACC6orf99
Ontologies - Pathways
QuickGOQ4VX62
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC6orf99
Atlas of Cancer Signalling NetworkC6orf99
Wikipedia pathwaysC6orf99
Orthology - Evolution
OrthoDB100130967
Phylogenetic Trees/Animal Genes : TreeFamC6orf99
HOVERGENQ4VX62
HOGENOMQ4VX62
Homologs : HomoloGeneC6orf99
Homology/Alignments : Family Browser (UCSC)C6orf99
Gene fusions - Rearrangements
Fusion : QuiverC6orf99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC6orf99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C6orf99
dbVarC6orf99
ClinVarC6orf99
1000_GenomesC6orf99 
Exome Variant ServerC6orf99
Varsome BrowserC6orf99
Genetic variants : HAPMAP100130967
Genomic Variants (DGV)C6orf99 [DGVbeta]
DECIPHERC6orf99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC6orf99 
Mutations
ICGC Data PortalC6orf99 
TCGA Data PortalC6orf99 
Broad Tumor PortalC6orf99
OASIS PortalC6orf99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC6orf99  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC6orf99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C6orf99
DgiDB (Drug Gene Interaction Database)C6orf99
DoCM (Curated mutations)C6orf99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C6orf99 (select a term)
intoGenC6orf99
Cancer3DC6orf99(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC6orf99
MedgenC6orf99
Genetic Testing Registry C6orf99
NextProtQ4VX62 [Medical]
TSGene100130967
GENETestsC6orf99
Target ValidationC6orf99
Huge Navigator C6orf99 [HugePedia]
snp3D : Map Gene to Disease100130967
BioCentury BCIQC6orf99
ClinGenC6orf99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130967
Chemical/Pharm GKB GenePA134977226
Clinical trialC6orf99
Miscellaneous
canSAR (ICR)C6orf99 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC6orf99
EVEXC6orf99
GoPubMedC6orf99
iHOPC6orf99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:38:40 CEST 2018

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