Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C7orf13 (chromosome 7 open reading frame 13)

Identity

Other aliasMY040
HGNC (Hugo) C7orf13
LocusID (NCBI) 129790
Atlas_Id 61256
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 156638561 and ends at 156640422 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf13   17126
Cards
Entrez_Gene (NCBI)C7orf13  129790  chromosome 7 open reading frame 13
AliasesMY040
GeneCards (Weizmann)C7orf13
Ensembl hg19 (Hinxton)ENSG00000182648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182648 [Gene_View]  chr7:156638561-156640422 [Contig_View]  C7orf13 [Vega]
ICGC DataPortalENSG00000182648
TCGA cBioPortalC7orf13
AceView (NCBI)C7orf13
Genatlas (Paris)C7orf13
WikiGenes129790
SOURCE (Princeton)C7orf13
Genetics Home Reference (NIH)C7orf13
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf13  -     chr7:156638561-156640422 -  7q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf13  -     7q36.3   [Description]    (hg19-Feb_2009)
EnsemblC7orf13 - 7q36.3 [CytoView hg19]  C7orf13 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBIC7orf13 [Mapview hg19]  C7orf13 [Mapview hg38]
OMIM610242   
Gene and transcription
Genbank (Entrez)AF063598 AF439977 AI168080 AK056371 BC031037
RefSeq transcript (Entrez)NM_032625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf13
Cluster EST : UnigeneHs.647014 [ NCBI ]
CGAP (NCI)Hs.647014
Alternative Splicing GalleryENSG00000182648
Gene ExpressionC7orf13 [ NCBI-GEO ]   C7orf13 [ EBI - ARRAY_EXPRESS ]   C7orf13 [ SEEK ]   C7orf13 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129790
GTEX Portal (Tissue expression)C7orf13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI28
Splice isoforms : SwissVarQ8NI28
PhosPhoSitePlusQ8NI28
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C7orf13
DMDM Disease mutations129790
Blocks (Seattle)C7orf13
SuperfamilyQ8NI28
Human Protein AtlasENSG00000182648
Peptide AtlasQ8NI28
HPRD12908
IPIIPI00169316   IPI00013254   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI28
IntAct (EBI)Q8NI28
FunCoupENSG00000182648
BioGRIDC7orf13
STRING (EMBL)C7orf13
ZODIACC7orf13
Ontologies - Pathways
QuickGOQ8NI28
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC7orf13
Atlas of Cancer Signalling NetworkC7orf13
Wikipedia pathwaysC7orf13
Orthology - Evolution
OrthoDB129790
GeneTree (enSembl)ENSG00000182648
Phylogenetic Trees/Animal Genes : TreeFamC7orf13
HOVERGENQ8NI28
HOGENOMQ8NI28
Homologs : HomoloGeneC7orf13
Homology/Alignments : Family Browser (UCSC)C7orf13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf13
dbVarC7orf13
ClinVarC7orf13
1000_GenomesC7orf13 
Exome Variant ServerC7orf13
ExAC (Exome Aggregation Consortium)C7orf13 (select the gene name)
Genetic variants : HAPMAP129790
Genomic Variants (DGV)C7orf13 [DGVbeta]
DECIPHERC7orf13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf13 
Mutations
ICGC Data PortalC7orf13 
TCGA Data PortalC7orf13 
Broad Tumor PortalC7orf13
OASIS PortalC7orf13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf13
BioMutasearch C7orf13
DgiDB (Drug Gene Interaction Database)C7orf13
DoCM (Curated mutations)C7orf13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf13 (select a term)
intoGenC7orf13
Cancer3DC7orf13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610242   
Orphanet
MedgenC7orf13
Genetic Testing Registry C7orf13
NextProtQ8NI28 [Medical]
TSGene129790
GENETestsC7orf13
Target ValidationC7orf13
Huge Navigator C7orf13 [HugePedia]
snp3D : Map Gene to Disease129790
BioCentury BCIQC7orf13
ClinGenC7orf13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129790
Chemical/Pharm GKB GenePA25944
Clinical trialC7orf13
Miscellaneous
canSAR (ICR)C7orf13 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf13
EVEXC7orf13
GoPubMedC7orf13
iHOPC7orf13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:30 CEST 2017

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