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C7orf25 (chromosome 7 open reading frame 25)

Identity

Alias_symbol (synonym)MGC2821
Other alias-
HGNC (Hugo) C7orf25
LocusID (NCBI) 79020
Atlas_Id 61257
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 42909273 and ends at 42912090 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C7orf25 (7p14.1) / RALB (2q14.2)GATS (7q22.1) / C7orf25 (7p14.1)HELZ (17q24.2) / C7orf25 (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf25   21703
Cards
Entrez_Gene (NCBI)C7orf25  79020  chromosome 7 open reading frame 25
Aliases
GeneCards (Weizmann)C7orf25
Ensembl hg19 (Hinxton)ENSG00000136197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136197 [Gene_View]  chr7:42909273-42912090 [Contig_View]  C7orf25 [Vega]
ICGC DataPortalENSG00000136197
TCGA cBioPortalC7orf25
AceView (NCBI)C7orf25
Genatlas (Paris)C7orf25
WikiGenes79020
SOURCE (Princeton)C7orf25
Genetics Home Reference (NIH)C7orf25
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf25  -     chr7:42909273-42912090 -  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf25  -     7p14.1   [Description]    (hg19-Feb_2009)
EnsemblC7orf25 - 7p14.1 [CytoView hg19]  C7orf25 - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBIC7orf25 [Mapview hg19]  C7orf25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024820 AK225194 AK298865 BC000769 BC001845
RefSeq transcript (Entrez)NM_001099858 NM_024054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf25
Cluster EST : UnigeneHs.698120 [ NCBI ]
CGAP (NCI)Hs.698120
Alternative Splicing GalleryENSG00000136197
Gene ExpressionC7orf25 [ NCBI-GEO ]   C7orf25 [ EBI - ARRAY_EXPRESS ]   C7orf25 [ SEEK ]   C7orf25 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79020
GTEX Portal (Tissue expression)C7orf25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPX7
Splice isoforms : SwissVarQ9BPX7
PhosPhoSitePlusQ9BPX7
Domains : Interpro (EBI)DUF1308   
Domain families : Pfam (Sanger)DUF1308 (PF07000)   
Domain families : Pfam (NCBI)pfam07000   
Conserved Domain (NCBI)C7orf25
DMDM Disease mutations79020
Blocks (Seattle)C7orf25
SuperfamilyQ9BPX7
Human Protein AtlasENSG00000136197
Peptide AtlasQ9BPX7
HPRD09861
IPIIPI00304461   IPI00927447   IPI00924573   IPI00927875   IPI00855943   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPX7
IntAct (EBI)Q9BPX7
FunCoupENSG00000136197
BioGRIDC7orf25
STRING (EMBL)C7orf25
ZODIACC7orf25
Ontologies - Pathways
QuickGOQ9BPX7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC7orf25
Atlas of Cancer Signalling NetworkC7orf25
Wikipedia pathwaysC7orf25
Orthology - Evolution
OrthoDB79020
GeneTree (enSembl)ENSG00000136197
Phylogenetic Trees/Animal Genes : TreeFamC7orf25
HOVERGENQ9BPX7
HOGENOMQ9BPX7
Homologs : HomoloGeneC7orf25
Homology/Alignments : Family Browser (UCSC)C7orf25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf25
dbVarC7orf25
ClinVarC7orf25
1000_GenomesC7orf25 
Exome Variant ServerC7orf25
ExAC (Exome Aggregation Consortium)C7orf25 (select the gene name)
Genetic variants : HAPMAP79020
Genomic Variants (DGV)C7orf25 [DGVbeta]
DECIPHERC7orf25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf25 
Mutations
ICGC Data PortalC7orf25 
TCGA Data PortalC7orf25 
Broad Tumor PortalC7orf25
OASIS PortalC7orf25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf25
DgiDB (Drug Gene Interaction Database)C7orf25
DoCM (Curated mutations)C7orf25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf25 (select a term)
intoGenC7orf25
Cancer3DC7orf25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf25
Genetic Testing Registry C7orf25
NextProtQ9BPX7 [Medical]
TSGene79020
GENETestsC7orf25
Huge Navigator C7orf25 [HugePedia]
snp3D : Map Gene to Disease79020
BioCentury BCIQC7orf25
ClinGenC7orf25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79020
Chemical/Pharm GKB GenePA134976499
Clinical trialC7orf25
Miscellaneous
canSAR (ICR)C7orf25 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf25
EVEXC7orf25
GoPubMedC7orf25
iHOPC7orf25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:03:47 CEST 2017

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