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C7orf31 (chromosome 7 open reading frame 31)

Identity

Other alias-
HGNC (Hugo) C7orf31
LocusID (NCBI) 136895
Atlas_Id 61259
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 25134697 and ends at 25180198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C7orf31 (7p15.3) / RARS2 (6q15)RPS3 (11q13.4) / C7orf31 (7p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf31   21722
Cards
Entrez_Gene (NCBI)C7orf31  136895  chromosome 7 open reading frame 31
Aliases
GeneCards (Weizmann)C7orf31
Ensembl hg19 (Hinxton)ENSG00000153790 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153790 [Gene_View]  chr7:25134697-25180198 [Contig_View]  C7orf31 [Vega]
ICGC DataPortalENSG00000153790
TCGA cBioPortalC7orf31
AceView (NCBI)C7orf31
Genatlas (Paris)C7orf31
WikiGenes136895
SOURCE (Princeton)C7orf31
Genetics Home Reference (NIH)C7orf31
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf31  -     chr7:25134697-25180198 -  7p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf31  -     7p15.3   [Description]    (hg19-Feb_2009)
EnsemblC7orf31 - 7p15.3 [CytoView hg19]  C7orf31 - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBIC7orf31 [Mapview hg19]  C7orf31 [Mapview hg38]
OMIM616071   
Gene and transcription
Genbank (Entrez)AK097248 AK098189 BC015397 BC043269 BC060879
RefSeq transcript (Entrez)NM_138811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf31
Cluster EST : UnigeneHs.122055 [ NCBI ]
CGAP (NCI)Hs.122055
Alternative Splicing GalleryENSG00000153790
Gene ExpressionC7orf31 [ NCBI-GEO ]   C7orf31 [ EBI - ARRAY_EXPRESS ]   C7orf31 [ SEEK ]   C7orf31 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136895
GTEX Portal (Tissue expression)C7orf31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N865   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N865  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N865
Splice isoforms : SwissVarQ8N865
PhosPhoSitePlusQ8N865
Domains : Interpro (EBI)DUF4555   
Domain families : Pfam (Sanger)DUF4555 (PF15093)   
Domain families : Pfam (NCBI)pfam15093   
Conserved Domain (NCBI)C7orf31
DMDM Disease mutations136895
Blocks (Seattle)C7orf31
SuperfamilyQ8N865
Human Protein AtlasENSG00000153790
Peptide AtlasQ8N865
HPRD12919
IPIIPI00297973   IPI00915992   IPI00915848   IPI00916244   
Protein Interaction databases
DIP (DOE-UCLA)Q8N865
IntAct (EBI)Q8N865
FunCoupENSG00000153790
BioGRIDC7orf31
STRING (EMBL)C7orf31
ZODIACC7orf31
Ontologies - Pathways
QuickGOQ8N865
Ontology : AmiGOprotein binding  cytoplasm  centrosome  
Ontology : EGO-EBIprotein binding  cytoplasm  centrosome  
NDEx NetworkC7orf31
Atlas of Cancer Signalling NetworkC7orf31
Wikipedia pathwaysC7orf31
Orthology - Evolution
OrthoDB136895
GeneTree (enSembl)ENSG00000153790
Phylogenetic Trees/Animal Genes : TreeFamC7orf31
HOVERGENQ8N865
HOGENOMQ8N865
Homologs : HomoloGeneC7orf31
Homology/Alignments : Family Browser (UCSC)C7orf31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf31
dbVarC7orf31
ClinVarC7orf31
1000_GenomesC7orf31 
Exome Variant ServerC7orf31
ExAC (Exome Aggregation Consortium)C7orf31 (select the gene name)
Genetic variants : HAPMAP136895
Genomic Variants (DGV)C7orf31 [DGVbeta]
DECIPHERC7orf31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf31 
Mutations
ICGC Data PortalC7orf31 
TCGA Data PortalC7orf31 
Broad Tumor PortalC7orf31
OASIS PortalC7orf31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf31
DgiDB (Drug Gene Interaction Database)C7orf31
DoCM (Curated mutations)C7orf31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf31 (select a term)
intoGenC7orf31
Cancer3DC7orf31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616071   
Orphanet
MedgenC7orf31
Genetic Testing Registry C7orf31
NextProtQ8N865 [Medical]
TSGene136895
GENETestsC7orf31
Target ValidationC7orf31
Huge Navigator C7orf31 [HugePedia]
snp3D : Map Gene to Disease136895
BioCentury BCIQC7orf31
ClinGenC7orf31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136895
Chemical/Pharm GKB GenePA134924921
Clinical trialC7orf31
Miscellaneous
canSAR (ICR)C7orf31 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf31
EVEXC7orf31
GoPubMedC7orf31
iHOPC7orf31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:30 CEST 2017

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