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C7orf34 (chromosome 7 open reading frame 34)

Identity

Alias_symbol (synonym)CTM-1
Other aliasctm-1
HGNC (Hugo) C7orf34
LocusID (NCBI) 135927
Atlas_Id 61261
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142939506 and ends at 142940870 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf34   21750
Cards
Entrez_Gene (NCBI)C7orf34  135927  chromosome 7 open reading frame 34
Aliasesctm-1
GeneCards (Weizmann)C7orf34
Ensembl hg19 (Hinxton)ENSG00000165131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165131 [Gene_View]  chr7:142939506-142940870 [Contig_View]  C7orf34 [Vega]
ICGC DataPortalENSG00000165131
TCGA cBioPortalC7orf34
AceView (NCBI)C7orf34
Genatlas (Paris)C7orf34
WikiGenes135927
SOURCE (Princeton)C7orf34
Genetics Home Reference (NIH)C7orf34
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf34  -     chr7:142939506-142940870 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf34  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblC7orf34 - 7q34 [CytoView hg19]  C7orf34 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIC7orf34 [Mapview hg19]  C7orf34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB083483 AB083484 AI990561 AY927625 BC014596
RefSeq transcript (Entrez)NM_178829
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_007492 NT_187562
Consensus coding sequences : CCDS (NCBI)C7orf34
Cluster EST : UnigeneHs.239676 [ NCBI ]
CGAP (NCI)Hs.239676
Alternative Splicing GalleryENSG00000165131
Gene ExpressionC7orf34 [ NCBI-GEO ]   C7orf34 [ EBI - ARRAY_EXPRESS ]   C7orf34 [ SEEK ]   C7orf34 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135927
GTEX Portal (Tissue expression)C7orf34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L11
Splice isoforms : SwissVarQ96L11
PhosPhoSitePlusQ96L11
Domains : Interpro (EBI)DUF4717   
Domain families : Pfam (Sanger)DUF4717 (PF15838)   
Domain families : Pfam (NCBI)pfam15838   
Conserved Domain (NCBI)C7orf34
DMDM Disease mutations135927
Blocks (Seattle)C7orf34
SuperfamilyQ96L11
Human Protein AtlasENSG00000165131
Peptide AtlasQ96L11
HPRD12922
IPIIPI01012816   IPI00607743   IPI00917606   
Protein Interaction databases
DIP (DOE-UCLA)Q96L11
IntAct (EBI)Q96L11
FunCoupENSG00000165131
BioGRIDC7orf34
STRING (EMBL)C7orf34
ZODIACC7orf34
Ontologies - Pathways
QuickGOQ96L11
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC7orf34
Atlas of Cancer Signalling NetworkC7orf34
Wikipedia pathwaysC7orf34
Orthology - Evolution
OrthoDB135927
GeneTree (enSembl)ENSG00000165131
Phylogenetic Trees/Animal Genes : TreeFamC7orf34
HOVERGENQ96L11
HOGENOMQ96L11
Homologs : HomoloGeneC7orf34
Homology/Alignments : Family Browser (UCSC)C7orf34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf34
dbVarC7orf34
ClinVarC7orf34
1000_GenomesC7orf34 
Exome Variant ServerC7orf34
ExAC (Exome Aggregation Consortium)C7orf34 (select the gene name)
Genetic variants : HAPMAP135927
Genomic Variants (DGV)C7orf34 [DGVbeta]
DECIPHERC7orf34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf34 
Mutations
ICGC Data PortalC7orf34 
TCGA Data PortalC7orf34 
Broad Tumor PortalC7orf34
OASIS PortalC7orf34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf34
DgiDB (Drug Gene Interaction Database)C7orf34
DoCM (Curated mutations)C7orf34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf34 (select a term)
intoGenC7orf34
Cancer3DC7orf34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf34
Genetic Testing Registry C7orf34
NextProtQ96L11 [Medical]
TSGene135927
GENETestsC7orf34
Target ValidationC7orf34
Huge Navigator C7orf34 [HugePedia]
snp3D : Map Gene to Disease135927
BioCentury BCIQC7orf34
ClinGenC7orf34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135927
Chemical/Pharm GKB GenePA134972511
Clinical trialC7orf34
Miscellaneous
canSAR (ICR)C7orf34 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf34
EVEXC7orf34
GoPubMedC7orf34
iHOPC7orf34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:30 CEST 2017

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