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C7orf43 (chromosome 7 open reading frame 43)

Identity

Alias_symbol (synonym)FLJ10925
Other alias-
HGNC (Hugo) C7orf43
LocusID (NCBI) 55262
Atlas_Id 61262
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100154420 and ends at 100158721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf43   25604
Cards
Entrez_Gene (NCBI)C7orf43  55262  chromosome 7 open reading frame 43
Aliases
GeneCards (Weizmann)C7orf43
Ensembl hg19 (Hinxton)ENSG00000146826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146826 [Gene_View]  chr7:100154420-100158721 [Contig_View]  C7orf43 [Vega]
ICGC DataPortalENSG00000146826
TCGA cBioPortalC7orf43
AceView (NCBI)C7orf43
Genatlas (Paris)C7orf43
WikiGenes55262
SOURCE (Princeton)C7orf43
Genetics Home Reference (NIH)C7orf43
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf43  -     chr7:100154420-100158721 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf43  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblC7orf43 - 7q22.1 [CytoView hg19]  C7orf43 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIC7orf43 [Mapview hg19]  C7orf43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI678979 AK001787 AK054872 AK302342 AK310170
RefSeq transcript (Entrez)NM_001303470 NM_018275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf43
Cluster EST : UnigeneHs.533139 [ NCBI ]
CGAP (NCI)Hs.533139
Alternative Splicing GalleryENSG00000146826
Gene ExpressionC7orf43 [ NCBI-GEO ]   C7orf43 [ EBI - ARRAY_EXPRESS ]   C7orf43 [ SEEK ]   C7orf43 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55262
GTEX Portal (Tissue expression)C7orf43
Human Protein AtlasENSG00000146826-C7orf43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVR3
Splice isoforms : SwissVarQ8WVR3
PhosPhoSitePlusQ8WVR3
Domains : Interpro (EBI)DUF4707   
Domain families : Pfam (Sanger)DUF4707 (PF15806)   
Domain families : Pfam (NCBI)pfam15806   
Conserved Domain (NCBI)C7orf43
DMDM Disease mutations55262
Blocks (Seattle)C7orf43
SuperfamilyQ8WVR3
Human Protein Atlas [tissue]ENSG00000146826-C7orf43 [tissue]
Peptide AtlasQ8WVR3
HPRD07716
IPIIPI00761016   IPI00829969   IPI00829997   IPI00927228   IPI01026526   IPI00926283   IPI00926471   IPI00926745   IPI00953699   IPI00925826   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVR3
IntAct (EBI)Q8WVR3
FunCoupENSG00000146826
BioGRIDC7orf43
STRING (EMBL)C7orf43
ZODIACC7orf43
Ontologies - Pathways
QuickGOQ8WVR3
Ontology : AmiGOmicrotubule organizing center  plasma membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBImicrotubule organizing center  plasma membrane  intracellular membrane-bounded organelle  
NDEx NetworkC7orf43
Atlas of Cancer Signalling NetworkC7orf43
Wikipedia pathwaysC7orf43
Orthology - Evolution
OrthoDB55262
GeneTree (enSembl)ENSG00000146826
Phylogenetic Trees/Animal Genes : TreeFamC7orf43
HOVERGENQ8WVR3
HOGENOMQ8WVR3
Homologs : HomoloGeneC7orf43
Homology/Alignments : Family Browser (UCSC)C7orf43
Gene fusions - Rearrangements
Tumor Fusion PortalC7orf43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf43
dbVarC7orf43
ClinVarC7orf43
1000_GenomesC7orf43 
Exome Variant ServerC7orf43
ExAC (Exome Aggregation Consortium)ENSG00000146826
GNOMAD BrowserENSG00000146826
Genetic variants : HAPMAP55262
Genomic Variants (DGV)C7orf43 [DGVbeta]
DECIPHERC7orf43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf43 
Mutations
ICGC Data PortalC7orf43 
TCGA Data PortalC7orf43 
Broad Tumor PortalC7orf43
OASIS PortalC7orf43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf43
DgiDB (Drug Gene Interaction Database)C7orf43
DoCM (Curated mutations)C7orf43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf43 (select a term)
intoGenC7orf43
Cancer3DC7orf43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC7orf43
MedgenC7orf43
Genetic Testing Registry C7orf43
NextProtQ8WVR3 [Medical]
TSGene55262
GENETestsC7orf43
Target ValidationC7orf43
Huge Navigator C7orf43 [HugePedia]
snp3D : Map Gene to Disease55262
BioCentury BCIQC7orf43
ClinGenC7orf43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55262
Chemical/Pharm GKB GenePA147358601
Clinical trialC7orf43
Miscellaneous
canSAR (ICR)C7orf43 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf43
EVEXC7orf43
GoPubMedC7orf43
iHOPC7orf43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:15:46 CET 2017

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