Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C7orf49 (chromosome 7 open reading frame 49)

Identity

Alias_symbol (synonym)MGC5242
FLJ27285
FLJ22450
MRI
Other alias
HGNC (Hugo) C7orf49
LocusID (NCBI) 78996
Atlas_Id 56116
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134850532 and ends at 134855578 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C7orf49 (7q33) / C7orf49 (7q33)C7orf49 (7q33) / KIF5B (10p11.22)C7orf49 (7q33) / LOC653739 ()
SPINT1 (15q15.1) / C7orf49 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf49   22432
Cards
Entrez_Gene (NCBI)C7orf49  78996  chromosome 7 open reading frame 49
AliasesMRI
GeneCards (Weizmann)C7orf49
Ensembl hg19 (Hinxton)ENSG00000122783 [Gene_View]  chr7:134850532-134855578 [Contig_View]  C7orf49 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122783 [Gene_View]  chr7:134850532-134855578 [Contig_View]  C7orf49 [Vega]
ICGC DataPortalENSG00000122783
TCGA cBioPortalC7orf49
AceView (NCBI)C7orf49
Genatlas (Paris)C7orf49
WikiGenes78996
SOURCE (Princeton)C7orf49
Genetics Home Reference (NIH)C7orf49
Genomic and cartography
GoldenPath hg19 (UCSC)C7orf49  -     chr7:134850532-134855578 -  7q33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C7orf49  -     7q33   [Description]    (hg38-Dec_2013)
EnsemblC7orf49 - 7q33 [CytoView hg19]  C7orf49 - 7q33 [CytoView hg38]
Mapping of homologs : NCBIC7orf49 [Mapview hg19]  C7orf49 [Mapview hg38]
OMIM616980   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001243749 NM_001243751 NM_001243752 NM_001243753 NM_001243754 NM_001243755 NM_001305629 NM_001305630 NM_024033
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf49
Cluster EST : UnigeneHs.744954 [ NCBI ]
CGAP (NCI)Hs.744954
Alternative Splicing GalleryENSG00000122783
Gene ExpressionC7orf49 [ NCBI-GEO ]   C7orf49 [ EBI - ARRAY_EXPRESS ]   C7orf49 [ SEEK ]   C7orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)78996
GTEX Portal (Tissue expression)C7orf49
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C7orf49
DMDM Disease mutations78996
Blocks (Seattle)C7orf49
Human Protein AtlasENSG00000122783
HPRD08333
IPIIPI00031497   IPI00884895   IPI00884968   IPI00942066   
Protein Interaction databases
FunCoupENSG00000122783
BioGRIDC7orf49
STRING (EMBL)C7orf49
ZODIACC7orf49
Ontologies - Pathways
Huge Navigator C7orf49 [HugePedia]
snp3D : Map Gene to Disease78996
BioCentury BCIQC7orf49
ClinGenC7orf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78996
Chemical/Pharm GKB GenePA162380533
Clinical trialC7orf49
Miscellaneous
canSAR (ICR)C7orf49 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf49
EVEXC7orf49
GoPubMedC7orf49
iHOPC7orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:41 CEST 2017

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