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C7orf50 (chromosome 7 open reading frame 50)

Identity

Alias_symbol (synonym)MGC11257
YCR016W
Other alias
HGNC (Hugo) C7orf50
LocusID (NCBI) 84310
Atlas_Id 61264
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1036623 and ends at 1177893 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C7orf50 (7p22.3) / ADAP1 (7p22.3)C7orf50 (7p22.3) / CTTN (11q13.3)C7orf50 (7p22.3) / FLNA (Xq28)
C7orf50 (7p22.3) / MAD1L1 (7p22.3)C7orf50 (7p22.3) / MICALL2 (7p22.3)C7orf50 (7p22.3) / MMD2 (7p22.1)
C7orf50 (7p22.3) / PIP4K2B (17q12)C7orf50 (7p22.3) / TTYH3 (7p22.3)C7orf50 (7p22.3) / ZYX (7q34)
LOC100507412 (-) / C7orf50 (7p22.3)TTYH3 (7p22.3) / C7orf50 (7p22.3)TYW1 (7q11.21) / C7orf50 (7p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf50   22421
Cards
Entrez_Gene (NCBI)C7orf50  84310  chromosome 7 open reading frame 50
AliasesYCR016W
GeneCards (Weizmann)C7orf50
Ensembl hg19 (Hinxton)ENSG00000146540 [Gene_View]  chr7:1036623-1177893 [Contig_View]  C7orf50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146540 [Gene_View]  chr7:1036623-1177893 [Contig_View]  C7orf50 [Vega]
ICGC DataPortalENSG00000146540
TCGA cBioPortalC7orf50
AceView (NCBI)C7orf50
Genatlas (Paris)C7orf50
WikiGenes84310
SOURCE (Princeton)C7orf50
Genetics Home Reference (NIH)C7orf50
Genomic and cartography
GoldenPath hg19 (UCSC)C7orf50  -     chr7:1036623-1177893 -  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C7orf50  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblC7orf50 - 7p22.3 [CytoView hg19]  C7orf50 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIC7orf50 [Mapview hg19]  C7orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF495721 BC006224 BC025971 BM676072 BM763235
RefSeq transcript (Entrez)NM_001134395 NM_001134396 NM_032350
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)C7orf50
Cluster EST : UnigeneHs.732316 [ NCBI ]
CGAP (NCI)Hs.732316
Alternative Splicing GalleryENSG00000146540
Gene ExpressionC7orf50 [ NCBI-GEO ]   C7orf50 [ EBI - ARRAY_EXPRESS ]   C7orf50 [ SEEK ]   C7orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84310
GTEX Portal (Tissue expression)C7orf50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRJ6
Splice isoforms : SwissVarQ9BRJ6
PhosPhoSitePlusQ9BRJ6
Domains : Interpro (EBI)DUF2373   
Domain families : Pfam (Sanger)DUF2373 (PF10180)   
Domain families : Pfam (NCBI)pfam10180   
Conserved Domain (NCBI)C7orf50
DMDM Disease mutations84310
Blocks (Seattle)C7orf50
SuperfamilyQ9BRJ6
Human Protein AtlasENSG00000146540
Peptide AtlasQ9BRJ6
HPRD14413
IPIIPI00031651   IPI00877786   IPI00892559   IPI00892533   IPI00947406   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRJ6
IntAct (EBI)Q9BRJ6
FunCoupENSG00000146540
BioGRIDC7orf50
STRING (EMBL)C7orf50
ZODIACC7orf50
Ontologies - Pathways
QuickGOQ9BRJ6
Ontology : AmiGOprotein binding  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  poly(A) RNA binding  
NDEx NetworkC7orf50
Atlas of Cancer Signalling NetworkC7orf50
Wikipedia pathwaysC7orf50
Orthology - Evolution
OrthoDB84310
GeneTree (enSembl)ENSG00000146540
Phylogenetic Trees/Animal Genes : TreeFamC7orf50
HOVERGENQ9BRJ6
HOGENOMQ9BRJ6
Homologs : HomoloGeneC7orf50
Homology/Alignments : Family Browser (UCSC)C7orf50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf50
dbVarC7orf50
ClinVarC7orf50
1000_GenomesC7orf50 
Exome Variant ServerC7orf50
ExAC (Exome Aggregation Consortium)C7orf50 (select the gene name)
Genetic variants : HAPMAP84310
Genomic Variants (DGV)C7orf50 [DGVbeta]
DECIPHER (Syndromes)7:1036623-1177893  ENSG00000146540
CONAN: Copy Number AnalysisC7orf50 
Mutations
ICGC Data PortalC7orf50 
TCGA Data PortalC7orf50 
Broad Tumor PortalC7orf50
OASIS PortalC7orf50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf50
DgiDB (Drug Gene Interaction Database)C7orf50
DoCM (Curated mutations)C7orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf50 (select a term)
intoGenC7orf50
Cancer3DC7orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf50
Genetic Testing Registry C7orf50
NextProtQ9BRJ6 [Medical]
TSGene84310
GENETestsC7orf50
Huge Navigator C7orf50 [HugePedia]
snp3D : Map Gene to Disease84310
BioCentury BCIQC7orf50
ClinGenC7orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84310
Chemical/Pharm GKB GenePA162380546
Clinical trialC7orf50
Miscellaneous
canSAR (ICR)C7orf50 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf50
EVEXC7orf50
GoPubMedC7orf50
iHOPC7orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:36 CET 2017

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