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C7orf55 (chromosome 7 open reading frame 55)

Identity

Other aliasFMC1
HSPC268
HGNC (Hugo) C7orf55
LocusID (NCBI) 154791
Atlas_Id 61265
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139025878 and ends at 139031065 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C7orf55 (7q34) / LUC7L2 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf55   26946
Cards
Entrez_Gene (NCBI)C7orf55  154791  chromosome 7 open reading frame 55
AliasesFMC1; HSPC268
GeneCards (Weizmann)C7orf55
Ensembl hg19 (Hinxton)ENSG00000164898 [Gene_View]  chr7:139025878-139031065 [Contig_View]  C7orf55 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164898 [Gene_View]  chr7:139025878-139031065 [Contig_View]  C7orf55 [Vega]
ICGC DataPortalENSG00000164898
TCGA cBioPortalC7orf55
AceView (NCBI)C7orf55
Genatlas (Paris)C7orf55
WikiGenes154791
SOURCE (Princeton)C7orf55
Genetics Home Reference (NIH)C7orf55
Genomic and cartography
GoldenPath hg19 (UCSC)C7orf55  -     chr7:139025878-139031065 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C7orf55  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblC7orf55 - 7q34 [CytoView hg19]  C7orf55 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIC7orf55 [Mapview hg19]  C7orf55 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA393224 AA620996 AF161386 AK093018 AM393147
RefSeq transcript (Entrez)NM_197964
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_030012 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)C7orf55
Cluster EST : UnigeneHs.718441 [ NCBI ]
CGAP (NCI)Hs.718441
Alternative Splicing GalleryENSG00000164898
Gene ExpressionC7orf55 [ NCBI-GEO ]   C7orf55 [ EBI - ARRAY_EXPRESS ]   C7orf55 [ SEEK ]   C7orf55 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154791
GTEX Portal (Tissue expression)C7orf55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HJ9
Splice isoforms : SwissVarQ96HJ9
PhosPhoSitePlusQ96HJ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C7orf55
DMDM Disease mutations154791
Blocks (Seattle)C7orf55
SuperfamilyQ96HJ9
Human Protein AtlasENSG00000164898
Peptide AtlasQ96HJ9
HPRD13714
IPIIPI00418174   
Protein Interaction databases
DIP (DOE-UCLA)Q96HJ9
IntAct (EBI)Q96HJ9
FunCoupENSG00000164898
BioGRIDC7orf55
STRING (EMBL)C7orf55
ZODIACC7orf55
Ontologies - Pathways
QuickGOQ96HJ9
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC7orf55
Atlas of Cancer Signalling NetworkC7orf55
Wikipedia pathwaysC7orf55
Orthology - Evolution
OrthoDB154791
GeneTree (enSembl)ENSG00000164898
Phylogenetic Trees/Animal Genes : TreeFamC7orf55
HOVERGENQ96HJ9
HOGENOMQ96HJ9
Homologs : HomoloGeneC7orf55
Homology/Alignments : Family Browser (UCSC)C7orf55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf55
dbVarC7orf55
ClinVarC7orf55
1000_GenomesC7orf55 
Exome Variant ServerC7orf55
ExAC (Exome Aggregation Consortium)C7orf55 (select the gene name)
Genetic variants : HAPMAP154791
Genomic Variants (DGV)C7orf55 [DGVbeta]
DECIPHER (Syndromes)7:139025878-139031065  ENSG00000164898
CONAN: Copy Number AnalysisC7orf55 
Mutations
ICGC Data PortalC7orf55 
TCGA Data PortalC7orf55 
Broad Tumor PortalC7orf55
OASIS PortalC7orf55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf55
DgiDB (Drug Gene Interaction Database)C7orf55
DoCM (Curated mutations)C7orf55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf55 (select a term)
intoGenC7orf55
Cancer3DC7orf55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf55
Genetic Testing Registry C7orf55
NextProtQ96HJ9 [Medical]
TSGene154791
GENETestsC7orf55
Huge Navigator C7orf55 [HugePedia]
snp3D : Map Gene to Disease154791
BioCentury BCIQC7orf55
ClinGenC7orf55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154791
Chemical/Pharm GKB GenePA164717374
Clinical trialC7orf55
Miscellaneous
canSAR (ICR)C7orf55 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf55
EVEXC7orf55
GoPubMedC7orf55
iHOPC7orf55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:36 CET 2017

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