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C7orf57 (chromosome 7 open reading frame 57)

Identity

Other alias-
HGNC (Hugo) C7orf57
LocusID (NCBI) 136288
Atlas_Id 61267
Location 7p12.3  [Link to chromosome band 7p12]
Location_base_pair Starts at 48035511 and ends at 48061297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf57   22247
Cards
Entrez_Gene (NCBI)C7orf57  136288  chromosome 7 open reading frame 57
Aliases
GeneCards (Weizmann)C7orf57
Ensembl hg19 (Hinxton)ENSG00000164746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164746 [Gene_View]  chr7:48035511-48061297 [Contig_View]  C7orf57 [Vega]
ICGC DataPortalENSG00000164746
TCGA cBioPortalC7orf57
AceView (NCBI)C7orf57
Genatlas (Paris)C7orf57
WikiGenes136288
SOURCE (Princeton)C7orf57
Genetics Home Reference (NIH)C7orf57
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf57  -     chr7:48035511-48061297 +  7p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf57  -     7p12.3   [Description]    (hg19-Feb_2009)
EnsemblC7orf57 - 7p12.3 [CytoView hg19]  C7orf57 - 7p12.3 [CytoView hg38]
Mapping of homologs : NCBIC7orf57 [Mapview hg19]  C7orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031107 BC045737 BI560654
RefSeq transcript (Entrez)NM_001100159 NM_001267865 NM_001267866
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf57
Cluster EST : UnigeneHs.258357 [ NCBI ]
CGAP (NCI)Hs.258357
Alternative Splicing GalleryENSG00000164746
Gene ExpressionC7orf57 [ NCBI-GEO ]   C7orf57 [ EBI - ARRAY_EXPRESS ]   C7orf57 [ SEEK ]   C7orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136288
GTEX Portal (Tissue expression)C7orf57
Human Protein AtlasENSG00000164746-C7orf57 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEG2
Splice isoforms : SwissVarQ8NEG2
PhosPhoSitePlusQ8NEG2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C7orf57
DMDM Disease mutations136288
Blocks (Seattle)C7orf57
SuperfamilyQ8NEG2
Human Protein Atlas [tissue]ENSG00000164746-C7orf57 [tissue]
Peptide AtlasQ8NEG2
IPIIPI00855966   IPI01013289   IPI00925814   IPI00926010   IPI00302368   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEG2
IntAct (EBI)Q8NEG2
FunCoupENSG00000164746
BioGRIDC7orf57
STRING (EMBL)C7orf57
ZODIACC7orf57
Ontologies - Pathways
QuickGOQ8NEG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC7orf57
Atlas of Cancer Signalling NetworkC7orf57
Wikipedia pathwaysC7orf57
Orthology - Evolution
OrthoDB136288
GeneTree (enSembl)ENSG00000164746
Phylogenetic Trees/Animal Genes : TreeFamC7orf57
HOVERGENQ8NEG2
HOGENOMQ8NEG2
Homologs : HomoloGeneC7orf57
Homology/Alignments : Family Browser (UCSC)C7orf57
Gene fusions - Rearrangements
Fusion: Tumor Portal C7orf57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf57
dbVarC7orf57
ClinVarC7orf57
1000_GenomesC7orf57 
Exome Variant ServerC7orf57
ExAC (Exome Aggregation Consortium)ENSG00000164746
GNOMAD BrowserENSG00000164746
Genetic variants : HAPMAP136288
Genomic Variants (DGV)C7orf57 [DGVbeta]
DECIPHERC7orf57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf57 
Mutations
ICGC Data PortalC7orf57 
TCGA Data PortalC7orf57 
Broad Tumor PortalC7orf57
OASIS PortalC7orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf57
DgiDB (Drug Gene Interaction Database)C7orf57
DoCM (Curated mutations)C7orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf57 (select a term)
intoGenC7orf57
Cancer3DC7orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf57
Genetic Testing Registry C7orf57
NextProtQ8NEG2 [Medical]
TSGene136288
GENETestsC7orf57
Target ValidationC7orf57
Huge Navigator C7orf57 [HugePedia]
snp3D : Map Gene to Disease136288
BioCentury BCIQC7orf57
ClinGenC7orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136288
Chemical/Pharm GKB GenePA162380613
Clinical trialC7orf57
Miscellaneous
canSAR (ICR)C7orf57 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf57
EVEXC7orf57
GoPubMedC7orf57
iHOPC7orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:48 CET 2017

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