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C7orf60 (chromosome 7 open reading frame 60)

Identity

Other alias-
HGNC (Hugo) C7orf60
LocusID (NCBI) 154743
Atlas_Id 61268
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112459202 and ends at 112579932 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf60   26475
Cards
Entrez_Gene (NCBI)C7orf60  154743  chromosome 7 open reading frame 60
Aliases
GeneCards (Weizmann)C7orf60
Ensembl hg19 (Hinxton)ENSG00000164603 [Gene_View]  chr7:112459202-112579932 [Contig_View]  C7orf60 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164603 [Gene_View]  chr7:112459202-112579932 [Contig_View]  C7orf60 [Vega]
ICGC DataPortalENSG00000164603
TCGA cBioPortalC7orf60
AceView (NCBI)C7orf60
Genatlas (Paris)C7orf60
WikiGenes154743
SOURCE (Princeton)C7orf60
Genetics Home Reference (NIH)C7orf60
Genomic and cartography
GoldenPath hg19 (UCSC)C7orf60  -     chr7:112459202-112579932 -  7q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C7orf60  -     7q31.1   [Description]    (hg38-Dec_2013)
EnsemblC7orf60 - 7q31.1 [CytoView hg19]  C7orf60 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIC7orf60 [Mapview hg19]  C7orf60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF274937 AK056380 AK299901 AL834437 BC114615
RefSeq transcript (Entrez)NM_152556
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)C7orf60
Cluster EST : UnigeneHs.489734 [ NCBI ]
CGAP (NCI)Hs.489734
Alternative Splicing GalleryENSG00000164603
Gene ExpressionC7orf60 [ NCBI-GEO ]   C7orf60 [ EBI - ARRAY_EXPRESS ]   C7orf60 [ SEEK ]   C7orf60 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154743
GTEX Portal (Tissue expression)C7orf60
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1RMZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1RMZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1RMZ1
Splice isoforms : SwissVarQ1RMZ1
PhosPhoSitePlusQ1RMZ1
Domains : Interpro (EBI)Bmt2    SAM-dependent_MTases   
Domain families : Pfam (Sanger)DUF3321 (PF11968)   
Domain families : Pfam (NCBI)pfam11968   
Conserved Domain (NCBI)C7orf60
DMDM Disease mutations154743
Blocks (Seattle)C7orf60
SuperfamilyQ1RMZ1
Human Protein AtlasENSG00000164603
Peptide AtlasQ1RMZ1
HPRD08108
IPIIPI00647561   IPI00924729   
Protein Interaction databases
DIP (DOE-UCLA)Q1RMZ1
IntAct (EBI)Q1RMZ1
FunCoupENSG00000164603
BioGRIDC7orf60
STRING (EMBL)C7orf60
ZODIACC7orf60
Ontologies - Pathways
QuickGOQ1RMZ1
Ontology : AmiGOrRNA (adenine) methyltransferase activity  rRNA methylation  
Ontology : EGO-EBIrRNA (adenine) methyltransferase activity  rRNA methylation  
NDEx NetworkC7orf60
Atlas of Cancer Signalling NetworkC7orf60
Wikipedia pathwaysC7orf60
Orthology - Evolution
OrthoDB154743
GeneTree (enSembl)ENSG00000164603
Phylogenetic Trees/Animal Genes : TreeFamC7orf60
HOVERGENQ1RMZ1
HOGENOMQ1RMZ1
Homologs : HomoloGeneC7orf60
Homology/Alignments : Family Browser (UCSC)C7orf60
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf60
dbVarC7orf60
ClinVarC7orf60
1000_GenomesC7orf60 
Exome Variant ServerC7orf60
ExAC (Exome Aggregation Consortium)C7orf60 (select the gene name)
Genetic variants : HAPMAP154743
Genomic Variants (DGV)C7orf60 [DGVbeta]
DECIPHER (Syndromes)7:112459202-112579932  ENSG00000164603
CONAN: Copy Number AnalysisC7orf60 
Mutations
ICGC Data PortalC7orf60 
TCGA Data PortalC7orf60 
Broad Tumor PortalC7orf60
OASIS PortalC7orf60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf60
DgiDB (Drug Gene Interaction Database)C7orf60
DoCM (Curated mutations)C7orf60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf60 (select a term)
intoGenC7orf60
Cancer3DC7orf60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf60
Genetic Testing Registry C7orf60
NextProtQ1RMZ1 [Medical]
TSGene154743
GENETestsC7orf60
Huge Navigator C7orf60 [HugePedia]
snp3D : Map Gene to Disease154743
BioCentury BCIQC7orf60
ClinGenC7orf60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154743
Chemical/Pharm GKB GenePA162380700
Clinical trialC7orf60
Miscellaneous
canSAR (ICR)C7orf60 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf60
EVEXC7orf60
GoPubMedC7orf60
iHOPC7orf60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:37 CET 2017

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