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C7orf61 (chromosome 7 open reading frame 61)

Identity

Alias_symbol (synonym)IMAGE:4839025
Other alias-
HGNC (Hugo) C7orf61
LocusID (NCBI) 402573
Atlas_Id 54180
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100456615 and ends at 100464271 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSC22D4 (7q22.1) / C7orf61 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf61   22135
Cards
Entrez_Gene (NCBI)C7orf61  402573  chromosome 7 open reading frame 61
Aliases
GeneCards (Weizmann)C7orf61
Ensembl hg19 (Hinxton)ENSG00000185955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185955 [Gene_View]  chr7:100456615-100464271 [Contig_View]  C7orf61 [Vega]
ICGC DataPortalENSG00000185955
TCGA cBioPortalC7orf61
AceView (NCBI)C7orf61
Genatlas (Paris)C7orf61
WikiGenes402573
SOURCE (Princeton)C7orf61
Genetics Home Reference (NIH)C7orf61
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf61  -     chr7:100456615-100464271 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf61  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblC7orf61 - 7q22.1 [CytoView hg19]  C7orf61 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIC7orf61 [Mapview hg19]  C7orf61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031966 HQ447951
RefSeq transcript (Entrez)NM_001004323
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf61
Cluster EST : UnigeneHs.632306 [ NCBI ]
CGAP (NCI)Hs.632306
Alternative Splicing GalleryENSG00000185955
Gene ExpressionC7orf61 [ NCBI-GEO ]   C7orf61 [ EBI - ARRAY_EXPRESS ]   C7orf61 [ SEEK ]   C7orf61 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402573
GTEX Portal (Tissue expression)C7orf61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ16
Splice isoforms : SwissVarQ8IZ16
PhosPhoSitePlusQ8IZ16
Domains : Interpro (EBI)DUF4703   
Domain families : Pfam (Sanger)DUF4703 (PF15775)   
Domain families : Pfam (NCBI)pfam15775   
Conserved Domain (NCBI)C7orf61
DMDM Disease mutations402573
Blocks (Seattle)C7orf61
SuperfamilyQ8IZ16
Human Protein AtlasENSG00000185955
Peptide AtlasQ8IZ16
HPRD17558
IPIIPI00217847   IPI00853602   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ16
IntAct (EBI)Q8IZ16
FunCoupENSG00000185955
BioGRIDC7orf61
STRING (EMBL)C7orf61
ZODIACC7orf61
Ontologies - Pathways
QuickGOQ8IZ16
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkC7orf61
Atlas of Cancer Signalling NetworkC7orf61
Wikipedia pathwaysC7orf61
Orthology - Evolution
OrthoDB402573
GeneTree (enSembl)ENSG00000185955
Phylogenetic Trees/Animal Genes : TreeFamC7orf61
HOVERGENQ8IZ16
HOGENOMQ8IZ16
Homologs : HomoloGeneC7orf61
Homology/Alignments : Family Browser (UCSC)C7orf61
Gene fusions - Rearrangements
Fusion : MitelmanTSC22D4/C7orf61 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf61
dbVarC7orf61
ClinVarC7orf61
1000_GenomesC7orf61 
Exome Variant ServerC7orf61
ExAC (Exome Aggregation Consortium)C7orf61 (select the gene name)
Genetic variants : HAPMAP402573
Genomic Variants (DGV)C7orf61 [DGVbeta]
DECIPHERC7orf61 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf61 
Mutations
ICGC Data PortalC7orf61 
TCGA Data PortalC7orf61 
Broad Tumor PortalC7orf61
OASIS PortalC7orf61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf61
DgiDB (Drug Gene Interaction Database)C7orf61
DoCM (Curated mutations)C7orf61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf61 (select a term)
intoGenC7orf61
Cancer3DC7orf61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf61
Genetic Testing Registry C7orf61
NextProtQ8IZ16 [Medical]
TSGene402573
GENETestsC7orf61
Target ValidationC7orf61
Huge Navigator C7orf61 [HugePedia]
snp3D : Map Gene to Disease402573
BioCentury BCIQC7orf61
ClinGenC7orf61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402573
Chemical/Pharm GKB GenePA162380715
Clinical trialC7orf61
Miscellaneous
canSAR (ICR)C7orf61 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf61
EVEXC7orf61
GoPubMedC7orf61
iHOPC7orf61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:26:19 CEST 2017

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