Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C7orf71 (chromosome 7 open reading frame 71)

Identity

Other alias-
HGNC (Hugo) C7orf71
LocusID (NCBI) 285941
Atlas_Id 61273
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 26637871 and ends at 26647270 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C7orf71   22364
Cards
Entrez_Gene (NCBI)C7orf71  285941  chromosome 7 open reading frame 71
Aliases
GeneCards (Weizmann)C7orf71
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:26637871-26647270 [Contig_View]  C7orf71 [Vega]
TCGA cBioPortalC7orf71
AceView (NCBI)C7orf71
Genatlas (Paris)C7orf71
WikiGenes285941
SOURCE (Princeton)C7orf71
Genetics Home Reference (NIH)C7orf71
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf71  -     chr7:26637871-26647270 +  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf71  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblC7orf71 - 7p15.2 [CytoView hg19]  C7orf71 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIC7orf71 [Mapview hg19]  C7orf71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093321 BC112220 BC112222 BC143810 CA390440
RefSeq transcript (Entrez)NM_001145531 NM_001302625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf71
Cluster EST : UnigeneHs.413394 [ NCBI ]
CGAP (NCI)Hs.413394
Gene ExpressionC7orf71 [ NCBI-GEO ]   C7orf71 [ EBI - ARRAY_EXPRESS ]   C7orf71 [ SEEK ]   C7orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285941
GTEX Portal (Tissue expression)C7orf71
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D174   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D174  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D174
Splice isoforms : SwissVarA4D174
PhosPhoSitePlusA4D174
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C7orf71
DMDM Disease mutations285941
Blocks (Seattle)C7orf71
SuperfamilyA4D174
Peptide AtlasA4D174
IPIIPI00807649   
Protein Interaction databases
DIP (DOE-UCLA)A4D174
IntAct (EBI)A4D174
BioGRIDC7orf71
STRING (EMBL)C7orf71
ZODIACC7orf71
Ontologies - Pathways
QuickGOA4D174
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC7orf71
Atlas of Cancer Signalling NetworkC7orf71
Wikipedia pathwaysC7orf71
Orthology - Evolution
OrthoDB285941
Phylogenetic Trees/Animal Genes : TreeFamC7orf71
HOVERGENA4D174
HOGENOMA4D174
Homologs : HomoloGeneC7orf71
Homology/Alignments : Family Browser (UCSC)C7orf71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf71
dbVarC7orf71
ClinVarC7orf71
1000_GenomesC7orf71 
Exome Variant ServerC7orf71
ExAC (Exome Aggregation Consortium)C7orf71 (select the gene name)
Genetic variants : HAPMAP285941
Genomic Variants (DGV)C7orf71 [DGVbeta]
DECIPHERC7orf71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf71 
Mutations
ICGC Data PortalC7orf71 
TCGA Data PortalC7orf71 
Broad Tumor PortalC7orf71
OASIS PortalC7orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf71
DgiDB (Drug Gene Interaction Database)C7orf71
DoCM (Curated mutations)C7orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf71 (select a term)
intoGenC7orf71
Cancer3DC7orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf71
Genetic Testing Registry C7orf71
NextProtA4D174 [Medical]
TSGene285941
GENETestsC7orf71
Huge Navigator C7orf71 [HugePedia]
snp3D : Map Gene to Disease285941
BioCentury BCIQC7orf71
ClinGenC7orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285941
Chemical/Pharm GKB GenePA165617664
Clinical trialC7orf71
Miscellaneous
canSAR (ICR)C7orf71 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf71
EVEXC7orf71
GoPubMedC7orf71
iHOPC7orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:03:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.