Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C7orf72 (chromosome 7 open reading frame 72)

Identity

Other alias-
HGNC (Hugo) C7orf72
LocusID (NCBI) 100130988
Atlas_Id 61274
Location 7p12.2  [Link to chromosome band 7p12]
Location_base_pair Starts at 50096086 and ends at 50159256 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		IGHMBP2 (11q13.3) / C7orf72 (7p12.2)ZNF716 (7p11.2) / C7orf72 (7p12.2)IGHMBP2 C7orf72
ZNF716 C7orf72

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C7orf72   22564
Cards
Entrez_Gene (NCBI)C7orf72  100130988  chromosome 7 open reading frame 72
Aliases
GeneCards (Weizmann)C7orf72
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:50096086-50159256 [Contig_View]  C7orf72 [Vega]
TCGA cBioPortalC7orf72
AceView (NCBI)C7orf72
Genatlas (Paris)C7orf72
WikiGenes100130988
SOURCE (Princeton)C7orf72
Genetics Home Reference (NIH)C7orf72
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf72  -     chr7:50096086-50159256 +  7p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf72  -     7p12.2   [Description]    (hg19-Feb_2009)
EnsemblC7orf72 - 7p12.2 [CytoView hg19]  C7orf72 - 7p12.2 [CytoView hg38]
Mapping of homologs : NCBIC7orf72 [Mapview hg19]  C7orf72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI696031 BX092263 DY654485
RefSeq transcript (Entrez)NM_001161834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf72
Cluster EST : UnigeneHs.99248 [ NCBI ]
CGAP (NCI)Hs.99248
Gene ExpressionC7orf72 [ NCBI-GEO ]   C7orf72 [ EBI - ARRAY_EXPRESS ]   C7orf72 [ SEEK ]   C7orf72 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130988
GTEX Portal (Tissue expression)C7orf72
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D263   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D263  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D263
Splice isoforms : SwissVarA4D263
PhosPhoSitePlusA4D263
Domains : Interpro (EBI)DUF4540   
Domain families : Pfam (Sanger)DUF4540 (PF15073)   
Domain families : Pfam (NCBI)pfam15073   
Conserved Domain (NCBI)C7orf72
DMDM Disease mutations100130988
Blocks (Seattle)C7orf72
SuperfamilyA4D263
Peptide AtlasA4D263
IPIIPI00887869   
Protein Interaction databases
DIP (DOE-UCLA)A4D263
IntAct (EBI)A4D263
BioGRIDC7orf72
STRING (EMBL)C7orf72
ZODIACC7orf72
Ontologies - Pathways
QuickGOA4D263
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC7orf72
Atlas of Cancer Signalling NetworkC7orf72
Wikipedia pathwaysC7orf72
Orthology - Evolution
OrthoDB100130988
Phylogenetic Trees/Animal Genes : TreeFamC7orf72
HOVERGENA4D263
HOGENOMA4D263
Homologs : HomoloGeneC7orf72
Homology/Alignments : Family Browser (UCSC)C7orf72
Gene fusions - Rearrangements
Fusion: TCGAIGHMBP2 C7orf72
Fusion: TCGAZNF716 C7orf72
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf72
dbVarC7orf72
ClinVarC7orf72
1000_GenomesC7orf72 
Exome Variant ServerC7orf72
ExAC (Exome Aggregation Consortium)C7orf72 (select the gene name)
Genetic variants : HAPMAP100130988
Genomic Variants (DGV)C7orf72 [DGVbeta]
DECIPHERC7orf72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf72 
Mutations
ICGC Data PortalC7orf72 
TCGA Data PortalC7orf72 
Broad Tumor PortalC7orf72
OASIS PortalC7orf72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf72
DgiDB (Drug Gene Interaction Database)C7orf72
DoCM (Curated mutations)C7orf72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf72 (select a term)
intoGenC7orf72
Cancer3DC7orf72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC7orf72
Genetic Testing Registry C7orf72
NextProtA4D263 [Medical]
TSGene100130988
GENETestsC7orf72
Target ValidationC7orf72
Huge Navigator C7orf72 [HugePedia]
snp3D : Map Gene to Disease100130988
BioCentury BCIQC7orf72
ClinGenC7orf72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130988
Chemical/Pharm GKB GenePA165617678
Clinical trialC7orf72
Miscellaneous
canSAR (ICR)C7orf72 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf72
EVEXC7orf72
GoPubMedC7orf72
iHOPC7orf72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:33 CEST 2017
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