Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C7orf73 (chromosome 7 open reading frame 73)

Identity

Alias_symbol (synonym)PL-5283
Other alias
HGNC (Hugo) C7orf73
LocusID (NCBI) 647087
Atlas_Id 61275
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 135662473 and ends at 135676412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C7orf73 (7q33) / AP2M1 (3q27.1)C7orf73 (7q33) / BRAF (7q34)C7orf73 (7q33) / C7orf73 (7q33)
INPP5D (2q37.1) / C7orf73 (7q33)SARNP (12q13.2) / C7orf73 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

&lbsp;=/\D>


External links

Nomenclature
HGNC (Hugo)C7orf73   41909
Cards
Entrez_Gene (NCBI)C7orf73  647087  chromosome 7 open reading frame 73
AliasesPL-5283
GeneCards (Weizmann)C7orf73
Ensembl hg19 (Hinxton)ENSG00000243317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243317 [Gene_View]  chr7:135662473-135676412 [Contig_View]  C7orf73 [Vega]
ICGC DataPortalENSG00000243317
TCGA cBioPortalC7orf73
AceView (NCBI)C7orf73
Genatlas (Paris)C7orf73
WikiGenes647087
SOURCE (Princeton)C7orf73
Genetics Home Reference (NIH)C7orf73
Genomic and cartography
GoldenPath hg38 (UCSC)C7orf73  -     chr7:135662473-135676412 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C7orf73  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblC7orf73 - 7q33 [CytoView hg19]  C7orf73 - 7q33 [CytoView hg38]
Mapping of homologs : NCBIC7orf73 [Mapview hg19]  C7orf73 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC016741 BC021734 BC031327 BC047474 BC063529
RefSeq transcript (Entrez)NM_001130929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C7orf73
Cluster EST : UnigeneHs.200022 [ NCBI ]
CGAP (NCI)Hs.200022
Alternative Splicing GalleryENSG00000243317
Gene ExpressionC7orf73 [ NCBI-GEO ]   C7orf73 [ EBI - ARRAY_EXPRESS ]   C7orf73 [ SEEK ]   C7orf73 [ MEM ]
Gene Expression Viewer (FireBrowse)C7orf73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647087
GTEX Portal (Tissue expression)C7orf73
Human Protein AtlasENSG00000243317-C7orf73 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE0CX11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE0CX11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE0CX11
Splice isoforms : SwissVarE0CX11
PhosPhoSitePlusE0CX11
Domains : Interpro (EBI)DUF4535   
Domain families : Pfam (Sanger)DUF4535 (PF15054)   
Domain families : Pfam (NCBI)pfam15054   
Conserved Domain (NCBI)C7orf73
DMDM Disease mutations647087
Blocks (Seattle)C7orf73
SuperfamilyE0CX11
Human Protein Atlas [tissue]ENSG00000243317-C7orf73 [tissue]
Peptide AtlasE0CX11
IPIIPI00884017   IPI00880147   
Protein Interaction databases
DIP (DOE-UCLA)E0CX11
IntAct (EBI)E0CX11
FunCoupENSG00000243317
BioGRIDC7orf73
STRING (EMBL)C7orf73
ZODIACC7orf73
Ontologies - Pathways
QuickGOE0CX11
Ontology : AmiGOintegral component of membrane  mitochondrial membrane  
Ontology : EGO-EBIintegral component of membrane  mitochondrial membrane  
NDEx NetworkC7orf73
Atlas of Cancer Signalling NetworkC7orf73
Wikipedia pathwaysC7orf73
Orthology - Evolution
OrthoDB647087
GeneTree (enSembl)ENSG00000243317
Phylogenetic Trees/Animal Genes : TreeFamC7orf73
HOVERGENE0CX11
HOGENOME0CX11
Homologs : HomoloGeneC7orf73
Homology/Alignments : Family Browser (UCSC)C7orf73
Gene fusions - Rearrangements
Tumor Fusion PortalC7orf73
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC7orf73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C7orf73
dbVarC7orf73
ClinVarC7orf73
1000_GenomesC7orf73 
Exome Variant ServerC7orf73
ExAC (Exome Aggregation Consortium)ENSG00000243317
GNOMAD BrowserENSG00000243317
Genetic variants : HAPMAP647087
Genomic Variants (DGV)C7orf73 [DGVbeta]
DECIPHERC7orf73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC7orf73 
Mutations
ICGC Data PortalC7orf73 
TCGA Data PortalC7orf73 
Broad Tumor PortalC7orf73
OASIS PortalC7orf73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC7orf73  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC7orf73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C7orf73
DgiDB (Drug Gene Interaction Database)C7orf73
DoCM (Curated mutations)C7orf73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C7orf73 (select a term)
intoGenC7orf73
Cancer3DC7orf73(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC7orf73
MedgenC7orf73
Genetic Testing Registry C7orf73
NextProtE0CX11 [Medical]
TSGene647087
GENETestsC7orf73
Target ValidationC7orf73
Huge Navigator C7orf73 [HugePedia]
snp3D : Map Gene to Disease647087
BioCentury BCIQC7orf73
ClinGenC7orf73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647087
Chemical/Pharm GKB GenePA166049075|/TD>/TS>
Clinical trialC7orf73
Miscellaneous
canSAR (ICR)C7orf73 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC7orf73
EVEXC7orf73
GoPubMedC7orf73
iHOPC7orf73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:54 CET 2017

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