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C8orf22 (chromosome 8 open reading frame 22)

Identity

Other alias-
HGNC (Hugo) C8orf22
LocusID (NCBI) 492307
Atlas_Id 54181
Location 8q11.21  [Link to chromosome band 8q11]
Location_base_pair Starts at 49984900 and ends at 49988642 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRKDC (8q11.21) / C8orf22 (8q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)C8orf22   31745
Cards
Entrez_Gene (NCBI)C8orf22  492307  chromosome 8 open reading frame 22
Aliases
GeneCards (Weizmann)C8orf22
Ensembl hg19 (Hinxton)ENSG00000168333 [Gene_View]  chr8:49984900-49988642 [Contig_View]  C8orf22 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168333 [Gene_View]  chr8:49984900-49988642 [Contig_View]  C8orf22 [Vega]
ICGC DataPortalENSG00000168333
TCGA cBioPortalC8orf22
AceView (NCBI)C8orf22
Genatlas (Paris)C8orf22
WikiGenes492307
SOURCE (Princeton)C8orf22
Genetics Home Reference (NIH)C8orf22
Genomic and cartography
GoldenPath hg19 (UCSC)C8orf22  -     chr8:49984900-49988642 +  8q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C8orf22  -     8q11.21   [Description]    (hg38-Dec_2013)
EnsemblC8orf22 - 8q11.21 [CytoView hg19]  C8orf22 - 8q11.21 [CytoView hg38]
Mapping of homologs : NCBIC8orf22 [Mapview hg19]  C8orf22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ276240 BC017981 BG202040 BX500169 DA820911
RefSeq transcript (Entrez)NM_001007176 NM_001256596 NM_001256597 NM_001256598
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)C8orf22
Cluster EST : UnigeneHs.741050 [ NCBI ]
CGAP (NCI)Hs.741050
Alternative Splicing GalleryENSG00000168333
Gene ExpressionC8orf22 [ NCBI-GEO ]   C8orf22 [ EBI - ARRAY_EXPRESS ]   C8orf22 [ SEEK ]   C8orf22 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)492307
GTEX Portal (Tissue expression)C8orf22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWR9
Splice isoforms : SwissVarQ8WWR9
PhosPhoSitePlusQ8WWR9
Domains : Interpro (EBI)PPDPF   
Domain families : Pfam (Sanger)PPDFL (PF15060)   
Domain families : Pfam (NCBI)pfam15060   
Conserved Domain (NCBI)C8orf22
DMDM Disease mutations492307
Blocks (Seattle)C8orf22
SuperfamilyQ8WWR9
Human Protein AtlasENSG00000168333
Peptide AtlasQ8WWR9
HPRD16670
IPIIPI00383113   IPI00740107   IPI00790803   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWR9
IntAct (EBI)Q8WWR9
FunCoupENSG00000168333
BioGRIDC8orf22
STRING (EMBL)C8orf22
ZODIACC8orf22
Ontologies - Pathways
QuickGOQ8WWR9
Ontology : AmiGOcell fate specification  exocrine pancreas development  
Ontology : EGO-EBIcell fate specification  exocrine pancreas development  
NDEx NetworkC8orf22
Atlas of Cancer Signalling NetworkC8orf22
Wikipedia pathwaysC8orf22
Orthology - Evolution
OrthoDB492307
GeneTree (enSembl)ENSG00000168333
Phylogenetic Trees/Animal Genes : TreeFamC8orf22
HOVERGENQ8WWR9
HOGENOMQ8WWR9
Homologs : HomoloGeneC8orf22
Homology/Alignments : Family Browser (UCSC)C8orf22
Gene fusions - Rearrangements
Fusion : MitelmanPRKDC/C8orf22 [8q11.21/8q11.21]  [t(8;8)(q11;q11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf22
dbVarC8orf22
ClinVarC8orf22
1000_GenomesC8orf22 
Exome Variant ServerC8orf22
ExAC (Exome Aggregation Consortium)C8orf22 (select the gene name)
Genetic variants : HAPMAP492307
Genomic Variants (DGV)C8orf22 [DGVbeta]
DECIPHER (Syndromes)8:49984900-49988642  ENSG00000168333
CONAN: Copy Number AnalysisC8orf22 
Mutations
ICGC Data PortalC8orf22 
TCGA Data PortalC8orf22 
Broad Tumor PortalC8orf22
OASIS PortalC8orf22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf22
DgiDB (Drug Gene Interaction Database)C8orf22
DoCM (Curated mutations)C8orf22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf22 (select a term)
intoGenC8orf22
Cancer3DC8orf22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf22
Genetic Testing Registry C8orf22
NextProtQ8WWR9 [Medical]
TSGene492307
GENETestsC8orf22
Huge Navigator C8orf22 [HugePedia]
snp3D : Map Gene to Disease492307
BioCentury BCIQC8orf22
ClinGenC8orf22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD492307
Chemical/Pharm GKB GenePA134881233
Clinical trialC8orf22
Miscellaneous
canSAR (ICR)C8orf22 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf22
EVEXC8orf22
GoPubMedC8orf22
iHOPC8orf22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:54:41 CEST 2017

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